Strain Fitness in Escherichia coli BW25113 around b4048

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
4,257,689	-	yjbK	b4046	0.34	-0.4
4,257,691	+	yjbK	b4046	0.35	+0.0
4,257,691	+	yjbK	b4046	0.35	+0.4
4,257,735	+	yjbK	b4046	0.43	-0.1
4,257,736	+	yjbK	b4046	0.44	-1.2
4,257,740	+	yjbK	b4046	0.44	+0.1
4,257,750	+	yjbK	b4046	0.46	+0.5
4,257,910	+	yjbK	b4046	0.77	-0.2
4,257,920	-	yjbK	b4046	0.79	-0.5
4,257,962	+	yjbK	b4046	0.87	-0.2
4,257,970	-	yjbK	b4046	0.89	+0.6
4,257,970	-	yjbK	b4046	0.89	-1.1
4,257,970	-	yjbK	b4046	0.89	-0.1
4,258,003	+				+0.2
4,258,020	+				+0.2
4,258,026	-				+0.8
4,258,042	-				-0.4
4,258,055	+				-0.0
4,258,055	+				-0.3
4,258,064	-				+0.8
4,258,064	-				+0.7
4,258,093	+				-0.3
4,258,093	+				+0.3
4,258,101	-				+1.8
4,258,101	-				+2.8
4,258,136	+				-0.4
4,258,137	+				-0.2
4,258,137	+				-0.1
4,258,137	+				-0.4
4,258,144	-				+2.8
4,258,152	+				-0.5
4,258,152	+				+0.5
4,258,273	+				+2.8
4,259,138	+	yjbM	b4048	0.73	+2.8
4,259,140	+	yjbM	b4048	0.73	+1.2
4,259,146	+	yjbM	b4048	0.74	+1.0
4,259,146	+	yjbM	b4048	0.74	+2.8
4,259,148	+	yjbM	b4048	0.74	+0.2
4,259,178	+	yjbM	b4048	0.79	-0.5
4,259,208	+	yjbM	b4048	0.83	-0.5
4,259,250	+	yjbM	b4048	0.89	+1.8
4,259,250	+	yjbM	b4048	0.89	-0.0
4,259,440	-				+0.2
4,259,440	-				+0.3
4,259,469	-				+0.5
4,259,471	-				+0.5
4,259,485	-				+0.4
4,259,485	-				+0.2
4,259,485	-				+0.2
4,259,485	-				-0.8
4,259,521	-				+0.4
4,259,521	-				-0.1
4,259,536	-				-0.3
4,259,536	-				+0.1
4,259,536	-				+0.1
4,259,546	-				-0.6
4,259,546	-				-0.0
4,259,547	+				+1.2
4,259,548	-				-0.9
4,259,553	-				-0.3
4,259,553	-				+0.2
4,259,553	-				+0.2
4,259,553	-				+1.0
4,259,554	-				-0.1
4,259,565	-				-0.6
4,259,585	-				-0.9
4,259,599	+				-0.3
4,259,602	+				+3.8
4,259,605	-				+0.1
4,259,608	-				+0.2
4,259,610	-				-0.1
4,259,610	-				-0.3
4,259,610	-				+0.4
4,259,610	-				+0.2
4,259,610	-				-0.0
4,259,610	-				-0.3
4,259,637	-				+0.4
4,259,757	+				+0.1
4,259,757	+				+0.7
4,259,765	-				-0.3
4,259,772	+				+0.8
4,259,772	+				+0.5
4,259,772	+				+0.5
4,259,772	+				-0.2
4,259,772	+				-0.0
4,259,777	+				-0.8
4,259,780	-				+0.6
4,259,780	-				+0.4
4,259,780	-				+0.4
4,259,780	-				+0.2
4,259,780	-				-0.4
4,259,780	-				+0.0
4,259,780	-				-0.0
4,259,785	-				-0.4
4,259,788	+				-0.4
4,259,788	+				+0.6
4,259,788	+				+0.1
4,259,788	-				-0.5
4,259,788	-				+0.4
4,259,853	+	dusA	b4049	0.12	+1.4
4,259,868	+	dusA	b4049	0.13	+0.0
4,259,878	-	dusA	b4049	0.14	-0.2
4,259,878	-	dusA	b4049	0.14	-0.4
4,259,936	+	dusA	b4049	0.20	-0.5
4,259,978	+	dusA	b4049	0.24	-0.2
4,260,002	+	dusA	b4049	0.27	+0.2
4,260,015	-	dusA	b4049	0.28	-0.1
4,260,017	+	dusA	b4049	0.28	-1.4
4,260,054	-	dusA	b4049	0.32	-0.2
4,260,078	+	dusA	b4049	0.34	+0.1
4,260,078	+	dusA	b4049	0.34	+0.9
4,260,102	-	dusA	b4049	0.37	-0.1
4,260,132	-	dusA	b4049	0.40	-0.0
4,260,182	+	dusA	b4049	0.45	+0.0