Strain Fitness in Escherichia coli BW25113 around b4000

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
4,197,316	+	nfi	b3998	0.75	-0.3
4,197,331	+	nfi	b3998	0.77	+0.4
4,197,353	+	nfi	b3998	0.80	+0.3
4,197,353	+	nfi	b3998	0.80	-0.2
4,197,353	+	nfi	b3998	0.80	+0.1
4,197,361	-	nfi	b3998	0.82	+0.9
4,197,361	-	nfi	b3998	0.82	-0.1
4,197,383	-	nfi	b3998	0.85	-0.0
4,197,383	-	nfi	b3998	0.85	+0.3
4,197,436	-				-0.5
4,197,436	-				+0.1
4,197,471	-				-0.0
4,197,593	-	yjaG	b3999	0.11	+0.3
4,197,608	+	yjaG	b3999	0.14	+0.5
4,197,618	-	yjaG	b3999	0.15	-0.2
4,197,618	-	yjaG	b3999	0.15	-0.1
4,197,733	-	yjaG	b3999	0.35	-0.3
4,197,855	-	yjaG	b3999	0.55	+0.0
4,197,855	-	yjaG	b3999	0.55	+1.6
4,197,871	+	yjaG	b3999	0.58	-0.2
4,197,879	-	yjaG	b3999	0.60	+0.2
4,197,911	+	yjaG	b3999	0.65	-0.5
4,197,911	+	yjaG	b3999	0.65	-0.7
4,197,983	-	yjaG	b3999	0.77	-0.4
4,198,028	+	yjaG	b3999	0.85	-0.0
4,198,028	+	yjaG	b3999	0.85	+1.0
4,198,070	-				+0.3
4,198,162	+				+0.4
4,198,235	-				-0.1
4,198,245	-				+1.1
4,198,250	-				+0.2
4,198,266	+				+0.5
4,198,287	-				+0.6
4,198,287	-				+0.5
4,198,359	-	hupA	b4000	0.20	+0.9
4,198,359	-	hupA	b4000	0.20	+0.1
4,198,380	+	hupA	b4000	0.28	-0.1
4,198,380	+	hupA	b4000	0.28	+1.0
4,198,388	-	hupA	b4000	0.31	+0.5
4,198,409	+	hupA	b4000	0.38	+0.4
4,198,409	+	hupA	b4000	0.38	+0.5
4,198,425	+	hupA	b4000	0.44	+0.8
4,198,443	-	hupA	b4000	0.51	+0.6
4,198,457	-	hupA	b4000	0.56	+0.8
4,198,577	-				+0.6
4,198,579	-				-0.4
4,198,579	-				+0.2
4,198,581	+				-0.2
4,198,581	+				+0.8
4,198,824	+	yjaH	b4001	0.34	+0.3
4,198,824	+	yjaH	b4001	0.34	+0.5
4,198,833	+	yjaH	b4001	0.35	-0.7
4,198,833	+	yjaH	b4001	0.35	+0.6
4,198,925	+	yjaH	b4001	0.48	-0.7
4,198,932	+	yjaH	b4001	0.49	+0.2
4,198,996	+	yjaH	b4001	0.58	-0.0
4,199,081	-	yjaH	b4001	0.71	-0.5
4,199,152	+	yjaH	b4001	0.81	+0.4
4,199,175	+	yjaH	b4001	0.84	+0.2
4,199,207	-	yjaH	b4001	0.89	-0.4
4,199,217	-				+0.2
4,199,256	+				-0.0
4,199,303	-				-0.3
4,199,308	-				+0.2
4,199,309	-				+0.2
4,199,434	+	yjaI	b4002	0.35	+0.3
4,199,434	+	yjaI	b4002	0.35	+0.4
4,199,460	+	yjaI	b4002	0.41	+0.4
4,199,489	-	yjaI	b4002	0.48	+0.0
4,199,517	-	yjaI	b4002	0.54	-0.1