Strain Fitness in Escherichia coli BW25113 around b3960

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
4,153,917	+	argC	b3958	0.89	-0.0
4,153,917	+	argC	b3958	0.89	+0.2
4,153,939	+				+0.5
4,153,939	+				-0.5
4,153,972	+				-0.1
4,154,018	+				+0.2
4,154,018	+				+1.0
4,154,023	+				+0.2
4,154,023	+				-0.6
4,154,023	+				-0.3
4,154,074	+				-1.1
4,154,079	+				+0.3
4,154,087	-				-0.2
4,154,090	-				-0.2
4,154,098	-				-0.4
4,154,121	+	argB	b3959	0.11	+0.1
4,154,144	+	argB	b3959	0.14	-0.1
4,154,153	+	argB	b3959	0.15	-0.0
4,154,249	+	argB	b3959	0.27	+0.1
4,154,249	+	argB	b3959	0.27	-0.4
4,154,353	+	argB	b3959	0.41	+0.9
4,154,353	+	argB	b3959	0.41	-0.3
4,154,389	+	argB	b3959	0.45	+0.1
4,154,394	-	argB	b3959	0.46	-0.4
4,154,403	+	argB	b3959	0.47	+0.4
4,154,421	+	argB	b3959	0.50	+0.1
4,154,421	+	argB	b3959	0.50	+0.5
4,154,472	+	argB	b3959	0.56	-0.2
4,154,487	-	argB	b3959	0.58	-0.8
4,154,497	-	argB	b3959	0.59	-0.9
4,154,509	+	argB	b3959	0.61	+0.0
4,154,517	-	argB	b3959	0.62	-1.3
4,154,549	-	argB	b3959	0.66	-0.6
4,154,659	+	argB	b3959	0.80	+0.3
4,154,667	-	argB	b3959	0.81	-1.6
4,154,667	-	argB	b3959	0.81	-0.9
4,154,671	-	argB	b3959	0.82	-0.1
4,154,683	-	argB	b3959	0.83	-0.2
4,154,683	-	argB	b3959	0.83	-0.5
4,154,696	+	argB	b3959	0.85	+0.4
4,154,701	+	argB	b3959	0.86	+0.5
4,154,707	+	argB	b3959	0.86	-0.0
4,154,729	+	argB	b3959	0.89	+0.3
4,154,729	+	argB	b3959	0.89	+0.1
4,154,750	+				+1.2
4,154,750	+				-0.2
4,154,761	+				+0.1
4,154,761	+				+0.1
4,154,763	+				-0.1
4,154,763	+				-0.2
4,154,771	-				-0.3
4,154,773	+				+0.2
4,154,878	-				-1.8
4,154,900	-				-2.5
4,154,901	+				-2.6
4,154,968	+				-2.1
4,155,017	+	argH	b3960	0.10	-1.6
4,155,019	-	argH	b3960	0.11	-4.0
4,155,128	+	argH	b3960	0.19	-1.8
4,155,128	+	argH	b3960	0.19	-3.1
4,155,156	-	argH	b3960	0.21	-2.4
4,155,178	+	argH	b3960	0.22	-2.3
4,155,178	+	argH	b3960	0.22	-1.4
4,155,193	-	argH	b3960	0.23	-2.1
4,155,193	-	argH	b3960	0.23	-1.6
4,155,229	-	argH	b3960	0.26	-2.1
4,155,237	-	argH	b3960	0.26	-1.1
4,155,237	-	argH	b3960	0.26	-2.3
4,155,237	-	argH	b3960	0.26	-2.5
4,155,336	-	argH	b3960	0.34	-2.1
4,155,338	+	argH	b3960	0.34	-1.9
4,155,366	-	argH	b3960	0.36	-1.2
4,155,366	-	argH	b3960	0.36	-3.3
4,155,373	+	argH	b3960	0.36	-2.2
4,155,381	-	argH	b3960	0.37	-1.6
4,155,385	-	argH	b3960	0.37	-2.1
4,155,436	-	argH	b3960	0.41	-2.4
4,155,437	+	argH	b3960	0.41	-1.0
4,155,437	+	argH	b3960	0.41	-2.4
4,155,619	-	argH	b3960	0.54	-2.0
4,155,699	-	argH	b3960	0.60	-3.0
4,155,699	-	argH	b3960	0.60	-2.7
4,155,713	-	argH	b3960	0.61	-3.0
4,155,713	-	argH	b3960	0.61	-2.9
4,155,767	+	argH	b3960	0.65	-2.4
4,155,767	+	argH	b3960	0.65	-2.6
4,155,770	-	argH	b3960	0.65	-1.7
4,155,770	-	argH	b3960	0.65	-1.9
4,155,865	+	argH	b3960	0.72	-1.7
4,155,875	+	argH	b3960	0.73	-2.0
4,155,876	+	argH	b3960	0.73	-2.8
4,155,883	-	argH	b3960	0.74	-1.6
4,155,885	+	argH	b3960	0.74	-2.0
4,155,885	+	argH	b3960	0.74	-2.4
4,155,958	+	argH	b3960	0.79	-2.4
4,155,961	-	argH	b3960	0.79	-2.5
4,156,012	+	argH	b3960	0.83	-1.6
4,156,024	+	argH	b3960	0.84	-2.2
4,156,024	+	argH	b3960	0.84	-2.6
4,156,034	-	argH	b3960	0.84	-1.9
4,156,046	+	argH	b3960	0.85	-2.8
4,156,054	-	argH	b3960	0.86	-1.4
4,156,117	+				-1.6
4,156,156	+				-2.8
4,156,156	+				-2.0
4,156,196	+				-1.8
4,156,196	+				-3.6
4,156,215	-				-0.5
4,156,235	+				-0.8
4,156,239	-				-1.2
4,156,322	-	oxyS	b4458	0.13	-0.3
4,156,322	-	oxyS	b4458	0.13	+0.2
4,156,476	-				-1.1
4,156,476	-				-1.7
4,156,476	-				-0.1
4,156,517	-				+0.1
4,156,555	-				-0.3
4,156,633	-	oxyR	b3961	0.13	-0.2
4,156,633	-	oxyR	b3961	0.13	-0.4
4,156,667	+	oxyR	b3961	0.17	+0.1
4,156,703	+	oxyR	b3961	0.21	-1.1
4,156,703	+	oxyR	b3961	0.21	-1.3
4,156,750	-	oxyR	b3961	0.26	-0.5
4,156,757	+	oxyR	b3961	0.27	-0.6
4,156,775	-	oxyR	b3961	0.29	-1.1
4,156,841	+	oxyR	b3961	0.36	-0.1
4,156,841	+	oxyR	b3961	0.36	-0.4
4,156,886	+	oxyR	b3961	0.41	-0.8
4,156,886	+	oxyR	b3961	0.41	-0.4
4,156,899	-	oxyR	b3961	0.42	+0.3
4,156,926	-	oxyR	b3961	0.45	-0.9
4,156,926	-	oxyR	b3961	0.45	-0.3
4,157,000	+	oxyR	b3961	0.53	-1.2
4,157,001	+	oxyR	b3961	0.53	-0.7
4,157,021	+	oxyR	b3961	0.55	-0.3
4,157,031	+	oxyR	b3961	0.56	-1.1
4,157,050	+	oxyR	b3961	0.58	-0.4
4,157,156	+	oxyR	b3961	0.70	-0.2
4,157,166	+	oxyR	b3961	0.71	+0.7
4,157,166	+	oxyR	b3961	0.71	-0.6
4,157,180	+	oxyR	b3961	0.73	-0.6
4,157,204	-	oxyR	b3961	0.75	-0.7
4,157,213	+	oxyR	b3961	0.76	-0.6
4,157,213	+	oxyR	b3961	0.76	-1.1
4,157,230	-	oxyR	b3961	0.78	-0.9