Strain Fitness in Escherichia coli BW25113 around b3941

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
4,129,641	+	metL	b3940	0.73	+0.3
4,129,641	+	metL	b3940	0.73	+0.3
4,129,649	-	metL	b3940	0.74	+0.1
4,129,649	-	metL	b3940	0.74	+0.2
4,129,656	-	metL	b3940	0.74	-0.5
4,129,684	+	metL	b3940	0.75	+0.2
4,129,684	+	metL	b3940	0.75	+0.3
4,129,684	+	metL	b3940	0.75	-0.1
4,129,690	-	metL	b3940	0.75	-0.7
4,129,690	-	metL	b3940	0.75	+0.2
4,129,722	+	metL	b3940	0.77	-0.5
4,129,759	+	metL	b3940	0.78	-0.4
4,129,759	+	metL	b3940	0.78	-1.0
4,129,759	+	metL	b3940	0.78	+0.3
4,129,759	+	metL	b3940	0.78	-0.9
4,129,783	+	metL	b3940	0.79	-0.1
4,129,805	+	metL	b3940	0.80	-0.7
4,129,811	+	metL	b3940	0.80	+0.1
4,129,830	+	metL	b3940	0.81	-0.8
4,129,836	-	metL	b3940	0.81	-0.8
4,129,866	+	metL	b3940	0.83	-0.9
4,129,866	+	metL	b3940	0.83	-0.6
4,129,879	+	metL	b3940	0.83	-1.2
4,129,879	+	metL	b3940	0.83	+0.1
4,129,925	-	metL	b3940	0.85	-1.5
4,129,928	+	metL	b3940	0.85	+0.2
4,129,928	+	metL	b3940	0.85	-0.1
4,129,938	+	metL	b3940	0.85	+0.6
4,129,938	+	metL	b3940	0.85	+0.4
4,129,953	+	metL	b3940	0.86	-0.4
4,130,020	-	metL	b3940	0.89	-0.2
4,130,079	+				-1.2
4,130,097	-				-0.1
4,130,097	-				-0.2
4,130,116	-				+0.9
4,130,194	+				+0.0
4,130,196	-				+0.1
4,130,202	-				-0.4
4,130,202	-				-0.6
4,130,211	+				+0.2
4,130,219	+				-0.5
4,130,229	+				-0.2
4,130,284	-				-0.7
4,130,309	+				+0.0
4,130,314	+				-0.1
4,130,325	-				-0.0
4,130,330	-				-0.2
4,130,378	+				-0.5
4,130,378	+				+0.4
4,130,386	-				-0.4
4,130,416	+				+0.0
4,130,479	-				+0.3
4,130,523	-				+0.1
4,130,609	-				-1.2
4,130,609	-				-1.0
4,130,614	-				-1.0
4,130,620	-				+0.2
4,130,631	+				-1.5
4,130,631	+				-1.7
4,130,678	-				-3.3
4,130,690	-				-2.4
4,130,787	+	metF	b3941	0.17	-3.4
4,130,787	+	metF	b3941	0.17	-3.5
4,130,795	-	metF	b3941	0.18	-1.6
4,130,849	-	metF	b3941	0.24	-3.7
4,130,853	+	metF	b3941	0.24	-2.0
4,130,853	+	metF	b3941	0.24	-3.1
4,130,856	+	metF	b3941	0.24	-2.9
4,130,861	-	metF	b3941	0.25	-2.6
4,130,882	+	metF	b3941	0.27	-2.3
4,130,883	+	metF	b3941	0.27	-2.3
4,130,885	-	metF	b3941	0.28	-3.2
4,130,885	-	metF	b3941	0.28	-2.3
4,130,940	+	metF	b3941	0.34	-2.9
4,131,034	-	metF	b3941	0.44	-2.3
4,131,079	+	metF	b3941	0.49	-3.2
4,131,236	-	metF	b3941	0.67	-1.5
4,131,286	-	metF	b3941	0.73	-2.8
4,131,368	-	metF	b3941	0.82	-3.0
4,131,372	-	metF	b3941	0.82	-3.7
4,131,372	-	metF	b3941	0.82	-3.2
4,131,372	-	metF	b3941	0.82	-1.5
4,131,372	-	metF	b3941	0.82	-2.4
4,131,420	-	metF	b3941	0.88	-2.2
4,131,435	+	metF	b3941	0.89	-1.8
4,131,465	+				-2.1
4,131,466	+				-1.9
4,131,468	-				-2.9
4,131,468	-				-1.1
4,131,472	-				-4.1
4,131,474	+				-1.8
4,131,474	+				-2.9
4,131,474	-				-1.6
4,131,474	-				-2.3
4,131,529	-				+0.3
4,131,548	+				-0.1
4,131,548	+				+0.6
4,131,586	-				+0.8
4,131,593	-				+0.1
4,131,626	+				-0.4
4,131,737	+				+0.3
4,131,737	+				+0.6
4,131,809	+				+0.9
4,131,819	+				-0.1
4,131,830	+				-0.1
4,131,835	+				-0.1
4,131,838	+				-0.2
4,131,838	+				-0.4
4,131,838	+				-1.1
4,131,838	+				+0.0
4,131,838	-				-0.4
4,131,838	-				+0.8
4,131,838	-				-0.7
4,131,840	+				-0.0
4,131,846	-				+1.0
4,131,846	-				+0.3
4,131,848	-				-0.4
4,131,855	-				+0.0
4,131,855	-				+0.2
4,131,873	+				-0.3
4,131,884	-				+0.2
4,131,934	+				+0.4
4,131,934	-				+0.5
4,131,957	+				+0.4
4,131,991	+				-0.7
4,132,015	+				+0.2
4,132,025	+				+0.1
4,132,027	-				+0.4
4,132,065	+				-0.7
4,132,065	+				+0.4
4,132,072	-				-0.1
4,132,126	+	katG	b3942	0.12	+0.4
4,132,140	+	katG	b3942	0.13	+0.2
4,132,167	+	katG	b3942	0.14	-0.2
4,132,167	+	katG	b3942	0.14	+0.2
4,132,244	+	katG	b3942	0.18	+0.4
4,132,244	+	katG	b3942	0.18	-0.0
4,132,254	+	katG	b3942	0.18	-0.4
4,132,300	-	katG	b3942	0.20	-0.3
4,132,300	-	katG	b3942	0.20	-0.2
4,132,409	-	katG	b3942	0.25	+0.1
4,132,463	-	katG	b3942	0.28	-0.7
4,132,465	+	katG	b3942	0.28	+0.3