Strain Fitness in Escherichia coli BW25113 around b3138

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
3,281,225	-				+0.7
3,281,244	+				-0.2
3,281,322	-	kbaY	b3137	0.18	+0.6
3,281,367	-	kbaY	b3137	0.23	-0.4
3,281,371	+	kbaY	b3137	0.24	+0.0
3,281,451	-	kbaY	b3137	0.33	-0.2
3,281,583	+	kbaY	b3137	0.49	-0.2
3,281,640	-	kbaY	b3137	0.55	+0.4
3,281,689	+	kbaY	b3137	0.61	-2.6
3,281,689	+	kbaY	b3137	0.61	+0.1
3,281,699	+	kbaY	b3137	0.62	-0.6
3,281,701	+	kbaY	b3137	0.62	-0.3
3,281,708	+	kbaY	b3137	0.63	+0.2
3,281,708	+	kbaY	b3137	0.63	+0.2
3,281,708	+	kbaY	b3137	0.63	+0.3
3,281,710	+	kbaY	b3137	0.63	+0.4
3,281,710	+	kbaY	b3137	0.63	-0.4
3,281,713	+	kbaY	b3137	0.64	+0.3
3,281,713	+	kbaY	b3137	0.64	-0.5
3,281,764	+	kbaY	b3137	0.70	+0.0
3,281,772	+	kbaY	b3137	0.70	+0.3
3,281,772	+	kbaY	b3137	0.70	+0.2
3,281,775	+	kbaY	b3137	0.71	-0.5
3,281,775	+	kbaY	b3137	0.71	-0.1
3,281,780	+	kbaY	b3137	0.71	+0.8
3,281,780	+	kbaY	b3137	0.71	-0.2
3,281,780	+	kbaY	b3137	0.71	+0.1
3,281,780	+	kbaY	b3137	0.71	+0.5
3,281,782	-	kbaY	b3137	0.72	-0.4
3,281,785	+	kbaY	b3137	0.72	+0.6
3,281,785	-	kbaY	b3137	0.72	+1.4
3,281,788	-	kbaY	b3137	0.72	+1.3
3,281,828	+	kbaY	b3137	0.77	-0.1
3,281,854	+	kbaY	b3137	0.80	-0.5
3,281,864	+	kbaY	b3137	0.81	+0.4
3,281,872	-	kbaY	b3137	0.82	+2.7
3,281,891	+	kbaY	b3137	0.84	+0.0
3,281,896	+	kbaY	b3137	0.85	+0.4
3,281,896	+	kbaY	b3137	0.85	+0.9
3,281,896	+	kbaY	b3137	0.85	-0.2
3,281,896	+	kbaY	b3137	0.85	-0.2
3,281,920	+	kbaY	b3137	0.88	+0.5
3,281,922	+	kbaY	b3137	0.88	-0.1
3,281,937	+	kbaY	b3137	0.90	-0.3
3,281,947	+				+0.2
3,281,947	+				-0.2
3,281,965	+				-0.3
3,282,046	+				-0.5
3,282,046	+				-0.1
3,282,068	+				-0.2
3,282,068	+				+0.7
3,282,080	+				+1.4
3,282,080	+				+2.7
3,282,193	-				-0.3
3,282,228	-				+1.1
3,282,228	-				+1.1
3,282,230	-				+1.7
3,282,230	-				-0.6
3,282,230	-				+1.7
3,282,235	-				-0.3
3,282,238	-				+0.4
3,282,245	-	agaB	b3138	0.11	+2.7
3,282,245	-	agaB	b3138	0.11	+0.6
3,282,251	-	agaB	b3138	0.12	+1.7
3,282,251	-	agaB	b3138	0.12	+0.4
3,282,251	-	agaB	b3138	0.12	-0.9
3,282,257	+	agaB	b3138	0.14	+1.7
3,282,257	+	agaB	b3138	0.14	+1.1
3,282,257	+	agaB	b3138	0.14	+3.7
3,282,258	+	agaB	b3138	0.14	+1.7
3,282,260	-	agaB	b3138	0.14	+0.9
3,282,265	-	agaB	b3138	0.15	+1.1
3,282,265	-	agaB	b3138	0.15	+1.1
3,282,265	-	agaB	b3138	0.15	+2.7
3,282,271	-	agaB	b3138	0.17	+0.5
3,282,271	-	agaB	b3138	0.17	+3.7
3,282,271	-	agaB	b3138	0.17	+0.7
3,282,271	-	agaB	b3138	0.17	+2.7
3,282,275	-	agaB	b3138	0.17	+2.7
3,282,285	-	agaB	b3138	0.19	+2.7
3,282,287	+	agaB	b3138	0.20	+0.4
3,282,295	-	agaB	b3138	0.22	+2.7
3,282,312	-	agaB	b3138	0.25	+2.7
3,282,322	+	agaB	b3138	0.27	+1.7
3,282,410	+	agaB	b3138	0.46	+1.7
3,282,487	+	agaB	b3138	0.62	+0.3
3,282,487	+	agaB	b3138	0.62	+2.7
3,282,558	+	agaB	b3138	0.77	+0.5
3,282,570	+	agaB	b3138	0.79	-0.7
3,282,570	+	agaB	b3138	0.79	+2.5
3,282,570	+	agaB	b3138	0.79	+2.1
3,282,579	+	agaB	b3138	0.81	+0.9
3,282,629	+				+0.5
3,282,676	-				+2.7
3,282,676	-				+0.4
3,282,744	-				-0.1
3,282,836	-	agaC	b3139	0.16	-0.1
3,282,836	-	agaC	b3139	0.16	+0.1
3,282,852	-	agaC	b3139	0.18	+0.7
3,282,852	-	agaC	b3139	0.18	-0.6
3,282,862	-	agaC	b3139	0.19	+0.8
3,282,862	-	agaC	b3139	0.19	+1.1
3,282,870	+	agaC	b3139	0.20	+1.1
3,282,877	-	agaC	b3139	0.21	+0.1
3,282,878	-	agaC	b3139	0.21	-0.7
3,282,903	-	agaC	b3139	0.24	-0.6
3,282,911	-	agaC	b3139	0.25	-0.3
3,282,912	-	agaC	b3139	0.25	-0.1
3,282,917	-	agaC	b3139	0.26	+0.3
3,282,917	-	agaC	b3139	0.26	-0.1
3,282,920	-	agaC	b3139	0.26	-0.5
3,282,920	-	agaC	b3139	0.26	+0.1
3,282,920	-	agaC	b3139	0.26	-0.0
3,282,920	-	agaC	b3139	0.26	-0.9
3,282,952	-	agaC	b3139	0.30	-0.1
3,282,957	+	agaC	b3139	0.31	-1.1
3,282,957	+	agaC	b3139	0.31	-0.5
3,282,960	+	agaC	b3139	0.31	+1.1
3,282,965	-	agaC	b3139	0.32	+0.6
3,282,966	+	agaC	b3139	0.32	-0.2
3,282,967	+	agaC	b3139	0.32	+0.3
3,282,967	+	agaC	b3139	0.32	-0.3
3,282,967	+	agaC	b3139	0.32	-0.3
3,282,967	+	agaC	b3139	0.32	-0.1
3,282,967	+	agaC	b3139	0.32	-0.2
3,282,967	+	agaC	b3139	0.32	+0.3
3,282,967	+	agaC	b3139	0.32	+0.4
3,282,967	+	agaC	b3139	0.32	+0.2
3,282,967	+	agaC	b3139	0.32	+0.4
3,282,967	+	agaC	b3139	0.32	-0.4
3,282,967	+	agaC	b3139	0.32	-0.2
3,282,967	+	agaC	b3139	0.32	-0.1
3,282,975	-	agaC	b3139	0.33	+0.9
3,282,975	-	agaC	b3139	0.33	-0.0
3,282,975	-	agaC	b3139	0.33	+0.2
3,282,975	-	agaC	b3139	0.33	-0.1
3,282,975	-	agaC	b3139	0.33	+0.0
3,282,975	-	agaC	b3139	0.33	+0.2
3,282,975	-	agaC	b3139	0.33	+0.0
3,282,975	-	agaC	b3139	0.33	+0.2
3,282,975	-	agaC	b3139	0.33	+0.6
3,282,975	-	agaC	b3139	0.33	-0.7
3,282,975	-	agaC	b3139	0.33	+0.6
3,282,975	-	agaC	b3139	0.33	+0.2
3,282,975	-	agaC	b3139	0.33	+0.8
3,282,975	-	agaC	b3139	0.33	+0.1
3,282,975	-	agaC	b3139	0.33	+0.4
3,283,025	+	agaC	b3139	0.40	+0.4
3,283,048	-	agaC	b3139	0.42	-1.7
3,283,141	+	agaC	b3139	0.54	-0.2
3,283,216	+	agaC	b3139	0.63	-0.4
3,283,298	-	agaC	b3139	0.74	+0.5
3,283,298	-	agaC	b3139	0.74	-0.3
3,283,316	+	agaC	b3139	0.76	+0.6
3,283,317	-	agaC	b3139	0.76	-0.1
3,283,334	-	agaC	b3139	0.78	+0.1
3,283,359	+	agaC	b3139	0.81	+0.3
3,283,359	+	agaC	b3139	0.81	+0.2
3,283,362	+	agaC	b3139	0.81	-0.4
3,283,498	-				+0.1
3,283,534	+				+0.3
3,283,534	+				-0.7
3,283,562	-				+0.5