Strain Fitness in Escherichia coli BW25113 around b2474

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
2,590,934	+	ypfN	b4547	0.75	-0.0
2,590,934	+	ypfN	b4547	0.75	-0.2
2,590,954	-	ypfN	b4547	0.85	-0.2
2,590,954	-	ypfN	b4547	0.85	-0.3
2,590,997	+				+0.3
2,591,119	-				+0.4
2,591,119	-				+0.4
2,591,127	-				+0.2
2,591,178	-	ypfH	b2473	0.12	-0.2
2,591,178	-	ypfH	b2473	0.12	-0.0
2,591,358	-	ypfH	b2473	0.38	-0.6
2,591,372	+	ypfH	b2473	0.40	+0.1
2,591,372	+	ypfH	b2473	0.40	+0.4
2,591,380	-	ypfH	b2473	0.41	-0.2
2,591,489	+	ypfH	b2473	0.57	+0.9
2,591,494	+	ypfH	b2473	0.57	-0.1
2,591,584	-	ypfH	b2473	0.70	+0.8
2,591,584	-	ypfH	b2473	0.70	-0.8
2,591,680	-	ypfH	b2473	0.84	+0.0
2,591,720	-	ypfH	b2473	0.90	+0.1
2,591,720	-	ypfH	b2473	0.90	+0.2
2,591,752	+				-0.2
2,591,912	-				-0.2
2,591,978	-				+0.7
2,591,978	-				+0.4
2,591,999	-				-0.3
2,592,010	-				+0.3
2,592,105	-	ypfI	b2474	0.12	+0.4
2,592,105	-	ypfI	b2474	0.12	+0.6
2,592,141	+	ypfI	b2474	0.14	+0.4
2,592,292	-	ypfI	b2474	0.21	-0.6
2,592,292	-	ypfI	b2474	0.21	-0.6
2,592,385	+	ypfI	b2474	0.26	+0.0
2,592,385	+	ypfI	b2474	0.26	-0.6
2,592,426	+	ypfI	b2474	0.28	+1.5
2,592,448	+	ypfI	b2474	0.29	+0.4
2,592,471	-	ypfI	b2474	0.30	+0.5
2,592,531	-	ypfI	b2474	0.33	+0.3
2,592,531	-	ypfI	b2474	0.33	-0.2
2,592,535	-	ypfI	b2474	0.33	+0.7
2,592,557	+	ypfI	b2474	0.34	+0.7
2,592,576	-	ypfI	b2474	0.35	+0.7
2,592,576	-	ypfI	b2474	0.35	-0.7
2,592,581	-	ypfI	b2474	0.35	+0.5
2,592,581	-	ypfI	b2474	0.35	+0.4
2,592,751	-	ypfI	b2474	0.44	+0.5
2,592,784	-	ypfI	b2474	0.46	+1.0
2,592,942	+	ypfI	b2474	0.53	+0.1
2,592,942	+	ypfI	b2474	0.53	+1.5
2,592,942	+	ypfI	b2474	0.53	+0.5
2,593,020	-	ypfI	b2474	0.57	+0.3
2,593,303	+	ypfI	b2474	0.71	-0.1
2,593,380	-	ypfI	b2474	0.75	+0.6
2,593,380	-	ypfI	b2474	0.75	-0.1
2,593,380	-	ypfI	b2474	0.75	+0.8
2,593,394	-	ypfI	b2474	0.76	+0.5
2,593,424	-	ypfI	b2474	0.77	+0.1
2,593,424	-	ypfI	b2474	0.77	+0.6
2,593,509	-	ypfI	b2474	0.81	+0.5
2,593,509	-	ypfI	b2474	0.81	+0.4
2,593,767	+				-0.1
2,593,775	-				+0.4
2,593,775	-				+0.2
2,593,960	-				-0.3
2,593,973	+				+0.2
2,594,113	-	ypfJ	b2475	0.25	+0.1
2,594,113	-	ypfJ	b2475	0.25	-0.6
2,594,224	+	ypfJ	b2475	0.38	-0.4
2,594,224	+	ypfJ	b2475	0.38	+0.8
2,594,282	-	ypfJ	b2475	0.45	-0.1
2,594,282	-	ypfJ	b2475	0.45	-0.2
2,594,331	-	ypfJ	b2475	0.50	-0.1
2,594,338	+	ypfJ	b2475	0.51	+0.1
2,594,375	+	ypfJ	b2475	0.55	+1.0
2,594,385	-	ypfJ	b2475	0.57	-0.4
2,594,430	-	ypfJ	b2475	0.62	+0.0
2,594,449	+	ypfJ	b2475	0.64	-0.3
2,594,449	+	ypfJ	b2475	0.64	-0.0
2,594,449	+	ypfJ	b2475	0.64	+1.2
2,594,449	-	ypfJ	b2475	0.64	-0.6
2,594,540	+	ypfJ	b2475	0.75	+0.3
2,594,573	+	ypfJ	b2475	0.78	-0.4
2,594,608	-	ypfJ	b2475	0.82	-0.2
2,594,720	+				-0.3
2,594,872	-				+0.3