Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeaG and yeaH are separated by 112 nucleotides yeaH and yeaI are separated by 146 nucleotides
b1783: yeaG - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) , at 1,864,932 to 1,866,866
yeaG
b1784: yeaH - yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) , at 1,866,979 to 1,868,262
yeaH
b1785: yeaI - predicted diguanylate cyclase (NCBI), at 1,868,409 to 1,869,884
yeaI
Position (kb)
1866
1867
1868
1869 Strain fitness (log2 ratio)
-2
-1
0
1 at 1866.001 kb on + strand, within yeaG at 1866.009 kb on - strand, within yeaG at 1866.158 kb on + strand, within yeaG at 1866.158 kb on + strand, within yeaG at 1866.313 kb on - strand, within yeaG at 1866.545 kb on - strand, within yeaG at 1866.658 kb on + strand, within yeaG at 1866.698 kb on + strand at 1866.698 kb on + strand at 1866.706 kb on - strand at 1866.877 kb on - strand at 1866.880 kb on + strand at 1866.928 kb on - strand at 1866.928 kb on - strand at 1867.119 kb on - strand, within yeaH at 1867.362 kb on - strand, within yeaH at 1867.362 kb on - strand, within yeaH at 1867.578 kb on + strand, within yeaH at 1867.578 kb on + strand, within yeaH at 1867.694 kb on + strand, within yeaH at 1867.723 kb on + strand, within yeaH at 1867.723 kb on + strand at 1867.772 kb on - strand, within yeaH at 1867.803 kb on + strand, within yeaH at 1867.803 kb on + strand, within yeaH at 1867.843 kb on + strand, within yeaH at 1867.941 kb on + strand, within yeaH at 1867.984 kb on - strand, within yeaH at 1868.025 kb on - strand, within yeaH at 1868.179 kb on + strand at 1868.219 kb on + strand at 1868.224 kb on + strand at 1868.238 kb on + strand at 1868.238 kb on + strand at 1868.275 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 1,866,001 + yeaG b1783 0.55 -1.2 1,866,009 - yeaG b1783 0.56 -2.4 1,866,158 + yeaG b1783 0.63 -0.6 1,866,158 + yeaG b1783 0.63 -2.0 1,866,313 - yeaG b1783 0.71 -0.8 1,866,545 - yeaG b1783 0.83 -1.5 1,866,658 + yeaG b1783 0.89 -0.6 1,866,698 + -0.2 1,866,698 + -1.0 1,866,706 - -1.1 1,866,877 - -0.4 1,866,880 + -0.4 1,866,928 - -0.9 1,866,928 - -0.9 1,867,119 - yeaH b1784 0.11 -1.0 1,867,362 - yeaH b1784 0.30 -0.3 1,867,362 - yeaH b1784 0.30 -0.5 1,867,578 + yeaH b1784 0.47 -0.9 1,867,578 + yeaH b1784 0.47 -1.8 1,867,694 + yeaH b1784 0.56 -1.9 1,867,723 + yeaH b1784 0.58 +0.0 1,867,723 + -0.3 1,867,772 - yeaH b1784 0.62 -0.9 1,867,803 + yeaH b1784 0.64 -1.7 1,867,803 + yeaH b1784 0.64 -0.5 1,867,843 + yeaH b1784 0.67 -1.1 1,867,941 + yeaH b1784 0.75 -1.3 1,867,984 - yeaH b1784 0.78 +1.3 1,868,025 - yeaH b1784 0.81 +1.0 1,868,179 + -0.5 1,868,219 + -1.0 1,868,224 + -0.8 1,868,238 + -0.2 1,868,238 + +1.5 1,868,275 + -0.0
Or see this region's nucleotide sequence