Experiment: Ying_OrganicAcid7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykfM and yafU are separated by 9 nucleotides yafU and yafF are separated by 3 nucleotides yafF and yafV are separated by 40 nucleotides yafV and ivy are separated by 153 nucleotides ivy and yafH are separated by 42 nucleotides
b4586: ykfM - hypothetical protein, no homologs (RefSeq), at 238,257 to 238,736
ykfM
b0218: yafU - predicted inner membrane protein (RefSeq), at 238,746 to 239,102
yafU
b4503: yafF - no description, at 239,106 to 239,378
yafF
b0219: yafV - predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI), at 239,419 to 240,189
yafV
b0220: ivy - inhibitor of vertebrate C-lysozyme (NCBI), at 240,343 to 240,816
ivy
b0221: yafH - putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS), at 240,859 to 243,303
yafH
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1
2 at 238.734 kb on - strand at 238.901 kb on + strand, within yafU at 238.910 kb on - strand, within yafU at 238.915 kb on - strand, within yafU at 238.915 kb on - strand, within yafU at 238.915 kb on - strand, within yafU at 239.013 kb on + strand, within yafU at 239.013 kb on + strand, within yafU at 239.013 kb on + strand, within yafU at 239.036 kb on - strand, within yafU at 239.036 kb on - strand, within yafU at 239.163 kb on + strand, within yafF at 239.166 kb on + strand, within yafF at 239.392 kb on - strand at 239.412 kb on + strand at 239.414 kb on - strand at 239.417 kb on + strand at 239.426 kb on + strand at 239.436 kb on - strand at 239.436 kb on - strand at 239.850 kb on - strand, within yafV at 239.850 kb on - strand, within yafV at 239.907 kb on + strand, within yafV at 240.066 kb on + strand, within yafV at 240.072 kb on + strand, within yafV at 240.098 kb on - strand, within yafV at 240.145 kb on + strand at 240.148 kb on + strand at 240.175 kb on + strand at 240.197 kb on - strand at 240.197 kb on - strand at 240.199 kb on - strand at 240.199 kb on - strand at 240.224 kb on + strand at 240.261 kb on - strand at 240.325 kb on + strand at 240.325 kb on + strand at 240.333 kb on + strand at 240.350 kb on + strand at 240.350 kb on + strand at 240.358 kb on - strand at 240.406 kb on + strand, within ivy at 240.493 kb on + strand, within ivy at 240.521 kb on - strand, within ivy at 240.544 kb on + strand, within ivy at 240.544 kb on + strand, within ivy at 240.608 kb on + strand, within ivy at 240.717 kb on + strand, within ivy at 240.743 kb on - strand, within ivy at 240.743 kb on - strand, within ivy at 240.843 kb on - strand at 240.939 kb on + strand at 240.939 kb on + strand at 241.035 kb on + strand at 241.035 kb on + strand at 241.158 kb on + strand, within yafH at 241.164 kb on + strand, within yafH at 241.164 kb on + strand, within yafH at 241.168 kb on - strand, within yafH
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 1 remove 238,734 - +2.7 238,901 + yafU b0218 0.43 +2.7 238,910 - yafU b0218 0.46 +0.7 238,915 - yafU b0218 0.47 +1.1 238,915 - yafU b0218 0.47 +0.9 238,915 - yafU b0218 0.47 -0.2 239,013 + yafU b0218 0.75 +2.7 239,013 + yafU b0218 0.75 +1.7 239,013 + yafU b0218 0.75 +2.7 239,036 - yafU b0218 0.81 +0.5 239,036 - yafU b0218 0.81 -0.5 239,163 + yafF b4503 0.21 -0.8 239,166 + yafF b4503 0.22 -0.6 239,392 - +0.8 239,412 + -0.1 239,414 - +0.8 239,417 + -0.4 239,426 + +0.2 239,436 - -0.0 239,436 - +0.6 239,850 - yafV b0219 0.56 +0.2 239,850 - yafV b0219 0.56 +0.5 239,907 + yafV b0219 0.63 +0.6 240,066 + yafV b0219 0.84 +0.2 240,072 + yafV b0219 0.85 +0.1 240,098 - yafV b0219 0.88 +0.6 240,145 + -0.4 240,148 + +0.0 240,175 + +0.9 240,197 - -1.6 240,197 - -1.8 240,199 - +0.2 240,199 - -0.0 240,224 + -0.2 240,261 - -0.9 240,325 + +0.6 240,325 + +0.0 240,333 + -0.3 240,350 + +0.3 240,350 + +0.2 240,358 - -0.0 240,406 + ivy b0220 0.13 -0.2 240,493 + ivy b0220 0.32 -0.4 240,521 - ivy b0220 0.38 +0.3 240,544 + ivy b0220 0.42 -0.1 240,544 + ivy b0220 0.42 +0.0 240,608 + ivy b0220 0.56 -0.5 240,717 + ivy b0220 0.79 -0.1 240,743 - ivy b0220 0.84 -0.2 240,743 - ivy b0220 0.84 -0.3 240,843 - -1.8 240,939 + +0.4 240,939 + +0.5 241,035 + +0.8 241,035 + +0.5 241,158 + yafH b0221 0.12 +0.3 241,164 + yafH b0221 0.12 +0.8 241,164 + yafH b0221 0.12 -0.0 241,168 - yafH b0221 0.13 +0.3
Or see this region's nucleotide sequence