Strain Fitness in Escherichia coli BW25113 around b3455

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
3,590,655	+				+0.4
3,590,659	-				-0.0
3,590,659	-				+0.3
3,590,703	-				-0.1
3,590,774	-				+0.4
3,590,810	-				-0.3
3,590,898	-	livF	b3454	0.21	+0.1
3,590,898	-	livF	b3454	0.21	+0.3
3,590,903	-	livF	b3454	0.22	+0.4
3,590,966	-	livF	b3454	0.31	-0.2
3,590,966	-	livF	b3454	0.31	+0.6
3,590,988	+	livF	b3454	0.34	+0.6
3,591,059	-	livF	b3454	0.44	+1.0
3,591,061	+	livF	b3454	0.44	+0.7
3,591,090	-	livF	b3454	0.48	+0.9
3,591,125	-	livF	b3454	0.53	+2.5
3,591,164	+	livF	b3454	0.58	-0.0
3,591,164	+	livF	b3454	0.58	+1.7
3,591,172	-	livF	b3454	0.60	+0.5
3,591,197	+	livF	b3454	0.63	+0.3
3,591,252	+	livF	b3454	0.71	+0.3
3,591,252	+	livF	b3454	0.71	+0.3
3,591,381	-	livF	b3454	0.89	+0.4
3,591,381	-	livF	b3454	0.89	+0.2
3,591,419	-				+0.4
3,591,479	-				+0.4
3,591,479	-				-0.2
3,591,547	-	livG	b3455	0.11	+0.5
3,591,584	+	livG	b3455	0.16	+0.9
3,591,592	-	livG	b3455	0.17	-1.1
3,591,748	-	livG	b3455	0.37	+0.7
3,591,748	-	livG	b3455	0.37	+1.0
3,591,748	-	livG	b3455	0.37	+0.5
3,591,765	+	livG	b3455	0.39	+0.5
3,591,768	-	livG	b3455	0.40	-0.0
3,591,834	+	livG	b3455	0.48	+0.2
3,591,834	+	livG	b3455	0.48	+0.8
3,591,881	+	livG	b3455	0.55	+1.5
3,591,907	+	livG	b3455	0.58	+1.0
3,591,937	-	livG	b3455	0.62	-0.2
3,591,943	-	livG	b3455	0.63	+0.2
3,591,962	-	livG	b3455	0.65	+0.7
3,591,974	-	livG	b3455	0.67	+0.6
3,592,053	+	livG	b3455	0.77	+0.2
3,592,148	-	livG	b3455	0.89	+0.9
3,592,229	+				-0.3
3,592,321	-				-0.3
3,592,436	+	livM	b3456	0.16	+1.3
3,592,436	+	livM	b3456	0.16	+0.5
3,592,590	-	livM	b3456	0.28	+0.1
3,592,640	+	livM	b3456	0.32	+0.7
3,592,763	+	livM	b3456	0.42	+0.2
3,592,763	+	livM	b3456	0.42	+0.4
3,592,768	+	livM	b3456	0.42	+0.2
3,592,768	+	livM	b3456	0.42	+0.3
3,592,822	+	livM	b3456	0.47	+0.6
3,592,822	+	livM	b3456	0.47	+0.5
3,592,834	+	livM	b3456	0.48	+0.4
3,593,081	+	livM	b3456	0.67	+0.3
3,593,081	+	livM	b3456	0.67	-0.1
3,593,103	-	livM	b3456	0.69	+0.6
3,593,103	-	livM	b3456	0.69	+0.2
3,593,139	+	livM	b3456	0.71	+0.5
3,593,210	+	livM	b3456	0.77	+0.5
3,593,210	+	livM	b3456	0.77	+0.1