Strain Fitness in Escherichia coli BW25113 around b2904

Experiment: Ying_OrganicAcid7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 1
3,046,232	-	gcvP	b2903	0.71	+2.6
3,046,281	+	gcvP	b2903	0.73	+2.4
3,046,289	-	gcvP	b2903	0.73	+2.3
3,046,289	-	gcvP	b2903	0.73	+2.4
3,046,305	-	gcvP	b2903	0.74	+2.3
3,046,305	-	gcvP	b2903	0.74	+2.0
3,046,305	-	gcvP	b2903	0.74	+3.0
3,046,305	-	gcvP	b2903	0.74	+2.4
3,046,325	+	gcvP	b2903	0.74	+2.4
3,046,375	+	gcvP	b2903	0.76	+1.9
3,046,636	+	gcvP	b2903	0.85	+2.4
3,046,636	+	gcvP	b2903	0.85	+2.4
3,046,653	-	gcvP	b2903	0.86	+2.3
3,046,659	-	gcvP	b2903	0.86	+4.0
3,046,685	-	gcvP	b2903	0.87	+2.4
3,046,693	+	gcvP	b2903	0.87	+2.2
3,046,693	+	gcvP	b2903	0.87	+2.0
3,046,693	-	gcvP	b2903	0.87	+2.6
3,046,696	-	gcvP	b2903	0.87	+2.0
3,046,706	-	gcvP	b2903	0.88	+2.4
3,046,724	+	gcvP	b2903	0.88	+2.2
3,046,724	+	gcvP	b2903	0.88	+2.5
3,046,733	+	gcvP	b2903	0.88	+2.3
3,046,803	-				+2.7
3,046,848	+				+2.1
3,046,854	-				+2.7
3,046,877	-				+2.1
3,047,124	-				-1.3
3,047,124	-				-2.3
3,047,214	-				+0.5
3,047,214	-				+1.0
3,047,321	+	gcvH	b2904	0.36	+2.5
3,047,321	+	gcvH	b2904	0.36	+2.2
3,047,468	+	gcvH	b2904	0.73	+2.1
3,047,542	+				+2.1
3,047,542	+				+2.4
3,047,684	+				+2.1
3,047,765	+	gcvT	b2905	0.16	+2.3
3,047,796	+	gcvT	b2905	0.18	+2.6
3,047,865	-	gcvT	b2905	0.25	+1.6
3,047,865	-	gcvT	b2905	0.25	+1.8
3,047,871	-	gcvT	b2905	0.25	+2.0
3,047,871	-	gcvT	b2905	0.25	+2.2
3,048,013	+	gcvT	b2905	0.38	+2.3
3,048,057	-	gcvT	b2905	0.42	+1.8
3,048,128	-	gcvT	b2905	0.49	+2.4
3,048,181	-	gcvT	b2905	0.54	+1.9
3,048,181	-	gcvT	b2905	0.54	+2.3
3,048,196	-	gcvT	b2905	0.55	+2.3
3,048,196	-	gcvT	b2905	0.55	+2.2
3,048,231	-	gcvT	b2905	0.58	+1.8
3,048,231	-	gcvT	b2905	0.58	+2.6
3,048,264	-	gcvT	b2905	0.61	+1.8
3,048,306	+	gcvT	b2905	0.65	+2.5
3,048,324	-	gcvT	b2905	0.67	+1.8
3,048,339	+	gcvT	b2905	0.68	+2.1
3,048,339	+	gcvT	b2905	0.68	+2.4
3,048,399	+	gcvT	b2905	0.73	+2.4
3,048,569	+	gcvT	b2905	0.89	+2.0
3,048,569	+	gcvT	b2905	0.89	+2.5