Strain Fitness in Escherichia coli BW25113 around b2911

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
3,053,056	-	ygfB	b2909	0.29	-0.3
3,053,058	-	ygfB	b2909	0.29	-0.0
3,053,058	-	ygfB	b2909	0.29	+0.7
3,053,063	+	ygfB	b2909	0.30	+0.2
3,053,107	-	ygfB	b2909	0.38	+0.0
3,053,117	-	ygfB	b2909	0.40	+0.3
3,053,117	-	ygfB	b2909	0.40	-0.8
3,053,123	-	ygfB	b2909	0.41	+0.2
3,053,232	-	ygfB	b2909	0.59	-0.0
3,053,240	+	ygfB	b2909	0.61	+0.2
3,053,263	-	ygfB	b2909	0.65	-0.9
3,053,277	+	ygfB	b2909	0.67	-2.1
3,053,308	-	ygfB	b2909	0.73	+0.4
3,053,308	-	ygfB	b2909	0.73	-0.2
3,053,355	+	ygfB	b2909	0.81	+0.3
3,053,355	+	ygfB	b2909	0.81	-0.6
3,053,359	-	ygfB	b2909	0.81	-0.1
3,053,359	-	ygfB	b2909	0.81	-0.2
3,053,392	+	ygfB	b2909	0.87	+0.1
3,053,424	+				-0.9
3,053,434	+				-0.1
3,053,457	+				-0.2
3,053,457	+				+0.6
3,053,457	+				-1.2
3,053,457	+				-0.1
3,053,591	+				-0.1
3,053,591	+				+0.0
3,053,635	+				+1.5
3,053,635	+				+0.7
3,053,635	+				-0.4
3,053,679	+	zapA	b2910	0.14	+0.8
3,053,722	-	zapA	b2910	0.27	-0.8
3,053,731	+	zapA	b2910	0.29	+0.5
3,053,886	-	zapA	b2910	0.76	-0.2
3,053,886	-	zapA	b2910	0.76	+1.0
3,053,891	+	zapA	b2910	0.78	+0.4
3,053,992	-				+0.3
3,054,147	+	ssrS	b2911	0.78	+0.4
3,054,147	+	ssrS	b2911	0.78	+1.1
3,054,348	+	ygfA	b2912	0.15	-0.8
3,054,388	-	ygfA	b2912	0.23	+1.3
3,054,480	-	ygfA	b2912	0.40	-0.8
3,054,480	-	ygfA	b2912	0.40	+0.3
3,054,524	+	ygfA	b2912	0.48	-1.0
3,054,532	-	ygfA	b2912	0.49	-1.6
3,054,578	+	ygfA	b2912	0.57	-0.3
3,054,696	-	ygfA	b2912	0.79	-0.9
3,054,704	+	ygfA	b2912	0.80	+0.8
3,054,704	+	ygfA	b2912	0.80	-1.4
3,054,711	+	ygfA	b2912	0.82	+0.2
3,054,711	+	ygfA	b2912	0.82	-1.7
3,054,788	-				-0.2
3,054,897	+	rygC	b4446	0.19	-0.2
3,054,946	-				+0.3
3,054,946	-				-0.7
3,055,023	-				+3.8
3,055,023	-				-0.1