Strain Fitness in Escherichia coli BW25113 around b4461

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,745,896	-				-0.2
2,745,896	-				-0.2
2,745,945	-				-0.2
2,745,945	-				+1.2
2,746,143	-	ypjD	b2611	0.20	-0.0
2,746,191	+	ypjD	b2611	0.26	-0.1
2,746,221	-	ypjD	b2611	0.30	+0.4
2,746,257	+	ypjD	b2611	0.34	+0.3
2,746,257	+	ypjD	b2611	0.34	-0.3
2,746,257	+	ypjD	b2611	0.34	-0.7
2,746,269	+	ypjD	b2611	0.36	+0.1
2,746,269	+	ypjD	b2611	0.36	+0.6
2,746,269	+	ypjD	b2611	0.36	+0.7
2,746,277	-	ypjD	b2611	0.37	+0.3
2,746,290	+	ypjD	b2611	0.39	-0.6
2,746,301	+	ypjD	b2611	0.40	-1.7
2,746,363	+	ypjD	b2611	0.48	-2.5
2,746,425	-	ypjD	b2611	0.56	-0.3
2,746,435	-	ypjD	b2611	0.57	-0.0
2,746,503	-	ypjD	b2611	0.66	+0.4
2,746,563	+	ypjD	b2611	0.73	+0.3
2,746,563	+	ypjD	b2611	0.73	-1.0
2,746,609	+	ypjD	b2611	0.79	-0.5
2,746,627	-	ypjD	b2611	0.81	+0.1
2,746,627	-	ypjD	b2611	0.81	-0.1
2,746,645	-	ypjD	b2611	0.83	-0.3
2,746,645	-	ypjD	b2611	0.83	+0.7
2,746,763	-				-0.2
2,746,804	+				+0.0
2,746,817	+				+0.3
2,746,817	+				+0.0
2,746,820	-				+0.2
2,746,957	+	yfjD	b4461	0.13	+0.8
2,746,981	+	yfjD	b4461	0.14	+0.3
2,746,985	-	yfjD	b4461	0.15	+2.3
2,747,009	-	yfjD	b4461	0.17	+0.4
2,747,018	+	yfjD	b4461	0.17	+0.4
2,747,152	+	yfjD	b4461	0.28	-0.0
2,747,315	-	yfjD	b4461	0.40	+0.6
2,747,315	-	yfjD	b4461	0.40	+0.6
2,747,324	+	yfjD	b4461	0.41	-0.2
2,747,332	-	yfjD	b4461	0.42	-0.2
2,747,414	-	yfjD	b4461	0.48	-0.3
2,747,414	-	yfjD	b4461	0.48	-0.2
2,747,503	-	yfjD	b4461	0.55	+0.4
2,747,503	-	yfjD	b4461	0.55	+0.4
2,747,554	+	yfjD	b4461	0.59	+0.7
2,747,647	-	yfjD	b4461	0.66	+1.7
2,747,647	-	yfjD	b4461	0.66	-0.6
2,747,654	-	yfjD	b4461	0.67	-1.1
2,747,717	-	yfjD	b4461	0.72	-0.2
2,747,740	+	yfjD	b4461	0.73	+0.6
2,747,765	-	yfjD	b4461	0.75	+0.4
2,747,796	+	yfjD	b4461	0.78	+0.8
2,747,805	-	yfjD	b4461	0.78	+0.5
2,747,807	+	yfjD	b4461	0.79	+0.5
2,747,822	+	yfjD	b4461	0.80	+0.1
2,747,955	+				-0.1
2,747,984	+				+1.1
2,748,001	-				-1.0
2,748,011	+				-0.1
2,748,025	+				+0.8
2,748,069	-				-0.1
2,748,571	-	grpE	b2614	0.73	-1.0
2,748,623	-	grpE	b2614	0.82	-0.1
2,748,804	+				-0.3
2,748,810	+				-0.5
2,748,818	-				+0.3