Strain Fitness in Escherichia coli BW25113 around b4373

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
4,605,238	+	rsmC	b4371	0.53	+0.3
4,605,238	+	rsmC	b4371	0.53	-0.4
4,605,298	-	rsmC	b4371	0.59	-0.9
4,605,304	+	rsmC	b4371	0.59	+0.1
4,605,407	+	rsmC	b4371	0.69	+0.5
4,605,453	-	rsmC	b4371	0.74	+0.2
4,605,484	-	rsmC	b4371	0.77	+0.3
4,605,484	-	rsmC	b4371	0.77	-0.3
4,605,533	-	rsmC	b4371	0.81	+0.4
4,605,564	-	rsmC	b4371	0.84	+0.8
4,605,579	-	rsmC	b4371	0.86	-0.3
4,605,579	-	rsmC	b4371	0.86	+0.4
4,605,610	+	rsmC	b4371	0.89	+0.0
4,605,662	-				+0.8
4,605,696	-				+0.5
4,605,696	-				-0.5
4,605,740	-				+1.0
4,605,783	-				-0.3
4,605,858	+				-0.1
4,606,288	-	rimI	b4373	0.18	+0.0
4,606,288	-	rimI	b4373	0.18	+0.8
4,606,309	+	rimI	b4373	0.23	+0.0
4,606,309	+	rimI	b4373	0.23	+0.2
4,606,385	-	rimI	b4373	0.40	+0.7
4,606,611	+				+0.5
4,606,636	-				+0.3
4,606,652	-				-0.2
4,606,655	-				+0.0
4,606,668	+				+0.4
4,606,724	+				+0.3
4,606,724	+				+0.5
4,606,733	+				-2.8
4,606,796	-	yjjG	b4374	0.19	-0.3
4,606,813	+	yjjG	b4374	0.21	-0.1
4,606,813	+	yjjG	b4374	0.21	+0.4
4,606,852	-	yjjG	b4374	0.27	-0.7
4,606,855	+	yjjG	b4374	0.27	+0.2
4,606,855	+	yjjG	b4374	0.27	+0.0
4,606,860	-	yjjG	b4374	0.28	+0.2
4,606,860	-	yjjG	b4374	0.28	-0.0
4,606,877	-	yjjG	b4374	0.31	+0.7
4,606,880	+	yjjG	b4374	0.31	+0.5
4,606,880	+	yjjG	b4374	0.31	-0.0
4,607,019	-	yjjG	b4374	0.52	-0.2
4,607,038	+	yjjG	b4374	0.54	-0.0
4,607,043	+	yjjG	b4374	0.55	-0.0
4,607,252	-	yjjG	b4374	0.86	+0.1
4,607,253	-	yjjG	b4374	0.86	-0.4
4,607,253	-	yjjG	b4374	0.86	-0.2
4,607,292	+				+1.0
4,607,292	+				-0.3
4,607,295	-				+0.3
4,607,295	-				-0.4
4,607,320	-				-0.5
4,607,320	-				+0.4
4,607,366	-				-1.7
4,607,416	+				+0.2
4,607,416	+				+0.1
4,607,460	-				-1.0
4,607,517	-				+1.1
4,607,517	-				+0.3
4,607,548	-				-1.4
4,607,562	+				-2.1