Strain Fitness in Escherichia coli BW25113 around b3836

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
4,019,914	+				+0.1
4,019,914	+				-0.5
4,019,957	-				+0.9
4,019,960	-				+0.9
4,019,972	-				+0.2
4,019,975	+				+0.7
4,019,975	+				+0.7
4,019,981	+				+0.5
4,019,983	-				-0.7
4,019,991	+				-0.1
4,020,007	-	b3836	b3836	0.14	+0.8
4,020,011	+	b3836	b3836	0.16	+0.7
4,020,014	+	b3836	b3836	0.17	+0.8
4,020,181	+	b3836	b3836	0.79	+0.9
4,020,182	+	b3836	b3836	0.79	+0.6
4,020,182	+	b3836	b3836	0.79	-0.6
4,020,197	+	b3836	b3836	0.85	-0.1
4,020,224	-				+1.0
4,020,226	-				-0.2
4,020,229	+				+0.9
4,020,232	+				+1.2
4,020,239	-				+0.8
4,020,262	-				-1.3
4,020,276	+				-2.6
4,020,282	-				-2.6
4,020,353	-	tatB	b3838	0.22	-2.1
4,020,357	+	tatB	b3838	0.22	+0.5
4,020,357	+	tatB	b3838	0.22	+0.9
4,020,366	+	tatB	b3838	0.24	+0.1
4,020,366	+	tatB	b3838	0.24	+0.9
4,020,366	+	tatB	b3838	0.24	+1.0
4,020,366	+	tatB	b3838	0.24	-1.2
4,020,368	+	tatB	b3838	0.25	-2.5
4,020,376	+	tatB	b3838	0.26	+0.7
4,020,381	+	tatB	b3838	0.27	+1.1
4,020,381	+	tatB	b3838	0.27	-1.1
4,020,381	+	tatB	b3838	0.27	-0.6
4,020,381	+	tatB	b3838	0.27	+0.2
4,020,384	-	tatB	b3838	0.28	-1.7
4,020,423	-	tatB	b3838	0.35	-0.6
4,020,423	-	tatB	b3838	0.35	-0.9
4,020,425	+	tatB	b3838	0.36	-0.1
4,020,453	+	tatB	b3838	0.41	+0.6
4,020,490	+	tatB	b3838	0.48	-0.4
4,020,491	+	tatB	b3838	0.48	+0.2
4,020,491	+	tatB	b3838	0.48	-0.3
4,020,495	+	tatB	b3838	0.49	-2.3
4,020,495	+	tatB	b3838	0.49	+0.3
4,020,522	+	tatB	b3838	0.54	+0.7
4,020,527	-	tatB	b3838	0.55	-0.3
4,020,539	+	tatB	b3838	0.58	+0.4
4,020,572	+	tatB	b3838	0.64	+1.2
4,020,579	-	tatB	b3838	0.66	-0.5
4,020,596	+	tatB	b3838	0.69	+0.1
4,020,640	-	tatB	b3838	0.77	-0.8
4,020,645	-	tatB	b3838	0.78	-1.3
4,020,686	+	tatB	b3838	0.86	+0.8
4,020,727	-				-0.2
4,020,750	+				-0.2
4,020,771	-				+1.6
4,020,777	-				-0.4
4,020,782	+				-1.5
4,020,796	+				+0.7
4,020,804	-				+0.4
4,020,814	-				-2.1
4,020,814	-				-0.8
4,020,814	-				-1.6
4,020,824	-				-1.3
4,020,839	+	tatC	b3839	0.10	-1.9
4,020,845	+	tatC	b3839	0.11	-1.8
4,020,851	-	tatC	b3839	0.12	-1.8
4,020,881	+	tatC	b3839	0.16	+0.7
4,020,891	+	tatC	b3839	0.17	-0.8
4,020,891	+	tatC	b3839	0.17	-1.1
4,020,891	+	tatC	b3839	0.17	+0.4
4,020,891	-	tatC	b3839	0.17	-0.7
4,020,902	-	tatC	b3839	0.18	-0.9
4,020,910	+	tatC	b3839	0.19	-0.3
4,020,910	+	tatC	b3839	0.19	-1.7
4,020,933	-	tatC	b3839	0.22	-1.5
4,020,990	-	tatC	b3839	0.30	-0.7
4,021,018	+	tatC	b3839	0.33	-1.8
4,021,028	+	tatC	b3839	0.35	-3.7
4,021,028	+	tatC	b3839	0.35	-2.2
4,021,030	-	tatC	b3839	0.35	-1.1
4,021,030	-	tatC	b3839	0.35	+0.0
4,021,045	+	tatC	b3839	0.37	-0.8
4,021,053	+	tatC	b3839	0.38	-2.7
4,021,053	+	tatC	b3839	0.38	-2.6
4,021,053	+	tatC	b3839	0.38	-1.3
4,021,055	+	tatC	b3839	0.38	-1.1
4,021,055	+	tatC	b3839	0.38	-0.2
4,021,055	+	tatC	b3839	0.38	-0.5
4,021,063	-	tatC	b3839	0.39	-0.0
4,021,063	-	tatC	b3839	0.39	-0.7
4,021,063	-	tatC	b3839	0.39	-3.1
4,021,063	-	tatC	b3839	0.39	-0.7
4,021,070	-	tatC	b3839	0.40	-0.5
4,021,078	-	tatC	b3839	0.41	-0.1
4,021,109	-	tatC	b3839	0.45	-2.5
4,021,167	+	tatC	b3839	0.53	-1.1
4,021,167	+	tatC	b3839	0.53	-0.4
4,021,169	+	tatC	b3839	0.53	+0.5
4,021,169	+	tatC	b3839	0.53	-1.4
4,021,177	-	tatC	b3839	0.54	-2.5
4,021,205	-	tatC	b3839	0.57	-0.2
4,021,228	+	tatC	b3839	0.60	+0.5
4,021,228	+	tatC	b3839	0.60	-1.2