Strain Fitness in Escherichia coli BW25113 around b2012

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,081,289	-	sbcB	b2011	0.36	+0.0
2,081,289	-	sbcB	b2011	0.36	+0.4
2,081,300	+	sbcB	b2011	0.36	-0.3
2,081,307	+	sbcB	b2011	0.37	+0.5
2,081,308	-	sbcB	b2011	0.37	+0.4
2,081,308	-	sbcB	b2011	0.37	-0.6
2,081,410	-	sbcB	b2011	0.44	+0.5
2,081,411	+	sbcB	b2011	0.44	-1.1
2,081,411	+	sbcB	b2011	0.44	+0.3
2,081,513	+	sbcB	b2011	0.51	-0.1
2,081,518	-	sbcB	b2011	0.52	+0.4
2,081,625	+	sbcB	b2011	0.59	-0.0
2,081,675	+	sbcB	b2011	0.63	-0.0
2,081,679	+	sbcB	b2011	0.63	-0.1
2,081,688	-	sbcB	b2011	0.64	-0.5
2,081,701	+	sbcB	b2011	0.64	+0.3
2,081,862	-	sbcB	b2011	0.76	+0.8
2,081,862	-	sbcB	b2011	0.76	-1.5
2,081,885	-	sbcB	b2011	0.77	-0.0
2,082,093	+				-0.4
2,082,093	+				+0.5
2,082,168	+				-1.9
2,082,266	+				+0.4
2,082,266	+				-0.3
2,082,266	+				+0.6
2,082,299	+	yeeD	b2012	0.21	+0.7
2,082,299	+	yeeD	b2012	0.21	+0.5
2,082,429	-	yeeD	b2012	0.79	-0.0
2,082,537	-				+0.1
2,082,537	-				-0.3
2,082,544	-				-1.3
2,082,544	-				-0.1
2,082,546	+				-0.7
2,082,674	+	yeeE	b2013	0.17	+0.3
2,082,694	-	yeeE	b2013	0.19	+0.3
2,082,775	-	yeeE	b2013	0.27	-0.4
2,082,775	-	yeeE	b2013	0.27	-1.3
2,082,851	-	yeeE	b2013	0.34	-0.1
2,082,881	+	yeeE	b2013	0.37	+1.1
2,082,897	-	yeeE	b2013	0.38	-0.2
2,082,897	-	yeeE	b2013	0.38	+0.5
2,082,915	-	yeeE	b2013	0.40	+0.1
2,082,973	+	yeeE	b2013	0.46	+0.2
2,082,973	+	yeeE	b2013	0.46	+0.9
2,082,981	-	yeeE	b2013	0.46	+0.3
2,083,040	-	yeeE	b2013	0.52	+0.3
2,083,040	-	yeeE	b2013	0.52	-0.8
2,083,126	+	yeeE	b2013	0.60	+0.2
2,083,139	+	yeeE	b2013	0.61	+0.1
2,083,183	+	yeeE	b2013	0.65	+0.3
2,083,186	-	yeeE	b2013	0.66	-0.9
2,083,186	-	yeeE	b2013	0.66	-0.8
2,083,258	-	yeeE	b2013	0.72	-0.2
2,083,310	+	yeeE	b2013	0.77	-0.2
2,083,319	-	yeeE	b2013	0.78	-0.3
2,083,319	-	yeeE	b2013	0.78	-0.2
2,083,462	+				+0.3
2,083,470	+				+0.6