Strain Fitness in Escherichia coli BW25113 around b1644

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,718,718	-	slyA	b1642	0.70	-0.3
1,718,718	-	slyA	b1642	0.70	+0.4
1,718,809	-				+0.6
1,719,062	-				-0.3
1,719,065	+				+1.3
1,719,078	+	ydhI	b1643	0.12	+0.4
1,719,103	-	ydhI	b1643	0.23	+0.3
1,719,163	+	ydhI	b1643	0.48	+0.5
1,719,171	-	ydhI	b1643	0.51	-0.0
1,719,171	-	ydhI	b1643	0.51	+0.6
1,719,190	+	ydhI	b1643	0.59	+0.1
1,719,211	+	ydhI	b1643	0.68	-0.2
1,719,221	-	ydhI	b1643	0.73	-0.6
1,719,559	-	b1644	b1644	0.32	-0.0
1,719,779	+	b1644	b1644	0.57	+0.3
1,719,779	+	b1644	b1644	0.57	+0.7
1,719,786	-	b1644	b1644	0.58	+0.3
1,719,786	-	b1644	b1644	0.58	+0.6
1,719,832	-	b1644	b1644	0.63	+0.0
1,719,832	-	b1644	b1644	0.63	+0.8
1,720,086	+				-1.3
1,720,196	-				+0.2
1,720,263	+				-0.8
1,720,263	+				-0.4
1,720,388	+	ydhK	b1645	0.12	-0.3
1,720,466	+	ydhK	b1645	0.16	+0.1
1,720,466	+	ydhK	b1645	0.16	+0.2
1,720,466	+	ydhK	b1645	0.16	-0.5
1,720,466	+	ydhK	b1645	0.16	-0.1
1,720,520	+	ydhK	b1645	0.19	-0.3
1,720,587	-	ydhK	b1645	0.22	+0.5
1,720,587	-	ydhK	b1645	0.22	+0.7
1,720,615	+	ydhK	b1645	0.23	+0.0
1,720,741	+	ydhK	b1645	0.30	+0.4
1,721,132	+	ydhK	b1645	0.49	-0.3
1,721,142	-	ydhK	b1645	0.50	-0.0
1,721,142	-	ydhK	b1645	0.50	+0.2