Strain Fitness in Escherichia coli BW25113 around b1156

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,207,069	+	ycfK	b1154	0.55	-0.7
1,207,070	+	ycfK	b1154	0.55	+0.2
1,207,076	+	ycfK	b1154	0.56	+0.1
1,207,084	-	ycfK	b1154	0.57	-2.2
1,207,097	+	ycfK	b1154	0.59	-1.2
1,207,147	+	ycfK	b1154	0.67	+0.0
1,207,155	+	ycfK	b1154	0.68	+0.9
1,207,156	+	ycfK	b1154	0.69	+0.4
1,207,164	+	ycfK	b1154	0.70	+0.5
1,207,169	+	ycfK	b1154	0.71	+0.1
1,207,177	+	ycfK	b1154	0.72	+0.9
1,207,177	+	ycfK	b1154	0.72	-0.4
1,207,192	+	ycfK	b1154	0.74	+0.2
1,207,246	+	ycfK	b1154	0.83	-0.3
1,207,248	+	ycfK	b1154	0.83	+0.2
1,207,248	+	ycfK	b1154	0.83	-0.3
1,207,258	+	ycfK	b1154	0.85	+0.9
1,207,258	+	ycfK	b1154	0.85	-0.5
1,207,260	+	ycfK	b1154	0.85	+0.1
1,207,267	+	ycfK	b1154	0.86	-0.5
1,207,270	+	ycfK	b1154	0.87	-0.1
1,207,291	+				+0.3
1,207,291	+				-0.4
1,207,339	+				+0.8
1,207,390	+				+0.3
1,207,390	+				-0.4
1,207,540	-	ymfS	b1155	0.45	+0.4
1,207,545	-	ymfS	b1155	0.46	-2.3
1,207,563	+	ymfS	b1155	0.50	+0.3
1,207,605	+	ymfS	b1155	0.60	+0.2
1,207,617	+	ymfS	b1155	0.63	+1.1
1,207,617	+	ymfS	b1155	0.63	+0.2
1,207,624	-	ymfS	b1155	0.65	+0.5
1,207,624	-	ymfS	b1155	0.65	+0.9
1,207,626	+	ymfS	b1155	0.65	+0.2
1,207,633	+	ymfS	b1155	0.67	+2.1
1,207,649	-	ymfS	b1155	0.71	+0.4
1,207,681	+	ymfS	b1155	0.79	-0.2
1,207,703	-	ymfS	b1155	0.84	+1.8
1,207,746	-				-0.5
1,207,746	-				-1.8
1,207,746	-				-0.5
1,207,746	-				-0.4
1,207,772	-				-0.0
1,207,780	+				-0.7
1,207,780	+				-0.9
1,207,792	+				+0.3
1,207,803	-	tfaE	b1156	0.10	+0.8
1,207,815	+	tfaE	b1156	0.12	+0.2
1,207,815	+	tfaE	b1156	0.12	+0.8
1,207,859	-	tfaE	b1156	0.20	+0.4
1,207,959	+	tfaE	b1156	0.36	+1.8
1,207,962	-	tfaE	b1156	0.37	-0.1
1,207,964	-	tfaE	b1156	0.37	+2.1
1,207,967	+	tfaE	b1156	0.38	-0.7
1,207,972	+	tfaE	b1156	0.38	-0.7
1,208,100	-	tfaE	b1156	0.60	+0.4
1,208,167	-	tfaE	b1156	0.71	+0.9
1,208,167	-	tfaE	b1156	0.71	+1.6
1,208,168	-	tfaE	b1156	0.71	+1.5
1,208,168	-	tfaE	b1156	0.71	+0.9
1,208,170	+	tfaE	b1156	0.71	+2.4
1,208,170	+	tfaE	b1156	0.71	+1.4
1,208,172	+	tfaE	b1156	0.72	+2.4
1,208,177	+	tfaE	b1156	0.72	+1.4
1,208,178	-	tfaE	b1156	0.73	-0.6
1,208,178	-	tfaE	b1156	0.73	+0.3
1,208,180	-	tfaE	b1156	0.73	+2.4
1,208,180	-	tfaE	b1156	0.73	+0.8
1,208,184	+	tfaE	b1156	0.74	+0.1
1,208,185	-	tfaE	b1156	0.74	+0.7
1,208,187	-	tfaE	b1156	0.74	-0.6
1,208,194	+	tfaE	b1156	0.75	+1.4
1,208,194	+	tfaE	b1156	0.75	+0.8
1,208,194	+	tfaE	b1156	0.75	+0.1
1,208,352	-				+2.2
1,208,413	-	stfE	b1157	0.14	-1.5
1,208,413	-	stfE	b1157	0.14	-2.2
1,208,441	-	stfE	b1157	0.20	+1.1
1,208,560	-	stfE	b1157	0.44	-1.3
1,208,560	-	stfE	b1157	0.44	+0.6
1,208,575	-	stfE	b1157	0.47	-0.8
1,208,576	-	stfE	b1157	0.47	-0.9
1,208,586	-	stfE	b1157	0.49	-0.5
1,208,604	-	stfE	b1157	0.52	-0.2
1,208,604	-	stfE	b1157	0.52	+0.1
1,208,604	-	stfE	b1157	0.52	+0.2
1,208,606	-	stfE	b1157	0.53	+0.3
1,208,609	-	stfE	b1157	0.53	+0.4
1,208,638	-	stfE	b1157	0.59	-0.3
1,208,642	-	stfE	b1157	0.60	-0.4
1,208,642	-	stfE	b1157	0.60	+0.8
1,208,642	-	stfE	b1157	0.60	-0.0
1,208,648	+	stfE	b1157	0.61	+0.1
1,208,752	+	stfE	b1157	0.82	+0.4
1,208,756	-	stfE	b1157	0.83	-0.1
1,208,791	-	stfE	b1157	0.90	-0.7
1,208,819	+				+0.2
1,208,838	-				+0.0
1,208,899	-				+0.5
1,208,946	+				+0.2
1,208,946	+				+0.8
1,208,964	-	pin	b1158	0.10	+0.0
1,208,964	-	pin	b1158	0.10	+1.0
1,208,968	+	pin	b1158	0.11	-0.3
1,209,015	-	pin	b1158	0.19	-1.1
1,209,110	-	pin	b1158	0.36	+2.4
1,209,296	+	pin	b1158	0.70	+0.6
1,209,296	+	pin	b1158	0.70	-0.6
1,209,306	+	pin	b1158	0.72	-0.2
1,209,306	+				+0.3
1,209,316	+	pin	b1158	0.74	+0.0
1,209,316	+	pin	b1158	0.74	-0.7
1,209,333	+	pin	b1158	0.77	-0.2