Strain Fitness in Escherichia coli BW25113 around b2144

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,229,972	-	cdd	b2143	0.12	-0.1
2,229,972	-	cdd	b2143	0.12	-0.6
2,229,984	-	cdd	b2143	0.13	+0.3
2,230,246	+	cdd	b2143	0.43	+0.4
2,230,255	-	cdd	b2143	0.44	-0.3
2,230,398	-	cdd	b2143	0.60	+0.2
2,230,398	-	cdd	b2143	0.60	-0.4
2,230,624	-	cdd	b2143	0.86	-0.2
2,230,685	+				-1.0
2,230,685	+				-0.9
2,230,776	+				-0.2
2,230,898	+				-0.1
2,230,933	-				+0.1
2,230,938	-				+0.6
2,230,998	+	sanA	b2144	0.14	+0.1
2,230,998	+	sanA	b2144	0.14	+0.1
2,231,014	+	sanA	b2144	0.16	+0.2
2,231,023	+	sanA	b2144	0.17	+0.1
2,231,023	+	sanA	b2144	0.17	-0.1
2,231,023	+	sanA	b2144	0.17	-0.1
2,231,023	+	sanA	b2144	0.17	+0.6
2,231,023	+	sanA	b2144	0.17	-0.2
2,231,025	+	sanA	b2144	0.17	-0.3
2,231,025	+	sanA	b2144	0.17	+0.2
2,231,026	+	sanA	b2144	0.17	+1.1
2,231,031	+	sanA	b2144	0.18	+0.5
2,231,031	+	sanA	b2144	0.18	+0.2
2,231,031	-	sanA	b2144	0.18	-0.4
2,231,032	+	sanA	b2144	0.18	-0.9
2,231,032	+	sanA	b2144	0.18	+0.4
2,231,032	+	sanA	b2144	0.18	+0.0
2,231,033	-	sanA	b2144	0.18	+0.0
2,231,033	-	sanA	b2144	0.18	-0.6
2,231,054	-	sanA	b2144	0.21	+1.1
2,231,055	-	sanA	b2144	0.22	-0.9
2,231,055	-	sanA	b2144	0.22	+0.6
2,231,091	+	sanA	b2144	0.27	-1.5
2,231,118	+	sanA	b2144	0.30	-0.4
2,231,119	+	sanA	b2144	0.30	-0.3
2,231,127	-	sanA	b2144	0.32	+2.1
2,231,142	+	sanA	b2144	0.34	+1.2
2,231,163	-	sanA	b2144	0.37	-0.7
2,231,191	-	sanA	b2144	0.40	+0.6
2,231,193	+	sanA	b2144	0.41	+0.2
2,231,212	+	sanA	b2144	0.43	-0.3
2,231,212	+	sanA	b2144	0.43	+0.1
2,231,222	+	sanA	b2144	0.45	+0.5
2,231,224	+	sanA	b2144	0.45	-0.2
2,231,224	+	sanA	b2144	0.45	+0.7
2,231,227	+	sanA	b2144	0.45	-0.2
2,231,230	-	sanA	b2144	0.46	-0.0
2,231,230	-	sanA	b2144	0.46	-1.3
2,231,232	-	sanA	b2144	0.46	+0.1
2,231,234	+	sanA	b2144	0.46	+0.2
2,231,238	+	sanA	b2144	0.47	+0.5
2,231,238	+	sanA	b2144	0.47	-2.4
2,231,243	+	sanA	b2144	0.48	-1.6
2,231,243	+	sanA	b2144	0.48	+0.6
2,231,266	-	sanA	b2144	0.51	+3.1
2,231,267	+	sanA	b2144	0.51	-1.0
2,231,267	+	sanA	b2144	0.51	-1.0
2,231,267	+	sanA	b2144	0.51	+0.2
2,231,270	+	sanA	b2144	0.51	-0.2
2,231,279	+	sanA	b2144	0.53	-0.1
2,231,279	+	sanA	b2144	0.53	-1.6
2,231,290	-	sanA	b2144	0.54	+0.6
2,231,338	+	sanA	b2144	0.61	+0.2
2,231,348	-	sanA	b2144	0.62	-0.9
2,231,363	-	sanA	b2144	0.64	+0.2
2,231,366	-	sanA	b2144	0.65	+2.6
2,231,389	+	sanA	b2144	0.68	-0.5
2,231,394	+	sanA	b2144	0.69	+0.0
2,231,394	+	sanA	b2144	0.69	+0.1
2,231,394	+	sanA	b2144	0.69	+0.4
2,231,394	+	sanA	b2144	0.69	-0.8
2,231,394	+	sanA	b2144	0.69	+0.0
2,231,394	+	sanA	b2144	0.69	+0.2
2,231,394	+	sanA	b2144	0.69	-0.1
2,231,396	+	sanA	b2144	0.69	-0.2
2,231,399	+	sanA	b2144	0.69	+1.1
2,231,402	-	sanA	b2144	0.70	+0.5
2,231,402	-	sanA	b2144	0.70	+0.1
2,231,402	-	sanA	b2144	0.70	+0.4
2,231,407	-	sanA	b2144	0.70	-2.7
2,231,407	-	sanA	b2144	0.70	-0.4
2,231,412	+	sanA	b2144	0.71	-0.4
2,231,415	+	sanA	b2144	0.72	+0.0
2,231,419	+	sanA	b2144	0.72	-0.2
2,231,424	+	sanA	b2144	0.73	+0.2
2,231,424	+	sanA	b2144	0.73	+0.9
2,231,427	+	sanA	b2144	0.73	-1.9
2,231,459	+	sanA	b2144	0.78	+0.1
2,231,469	+	sanA	b2144	0.79	-0.3
2,231,512	-	sanA	b2144	0.85	+0.6
2,231,514	+	sanA	b2144	0.85	-0.0
2,231,517	+	sanA	b2144	0.86	-0.5
2,231,524	+	sanA	b2144	0.87	+0.4
2,231,525	-	sanA	b2144	0.87	-0.2
2,231,537	+	sanA	b2144	0.88	-0.1
2,231,543	-	sanA	b2144	0.89	+1.6
2,231,571	+				-0.0
2,231,636	+				-0.3
2,231,675	-	yeiS	b2145	0.22	+1.1
2,231,691	+	yeiS	b2145	0.29	-0.8
2,231,691	+	yeiS	b2145	0.29	+0.2
2,231,748	+	yeiS	b2145	0.53	+0.4
2,231,748	+	yeiS	b2145	0.53	-0.2
2,231,748	+	yeiS	b2145	0.53	-0.2
2,231,748	+	yeiS	b2145	0.53	+0.3
2,231,748	+	yeiS	b2145	0.53	+1.1
2,231,817	+	yeiS	b2145	0.81	-1.3
2,231,836	+	yeiS	b2145	0.89	+0.1
2,231,981	-				-1.3
2,231,992	+				+0.7
2,231,992	+				+1.2
2,232,005	-				-0.4
2,232,016	+				-0.6
2,232,046	-				-0.4
2,232,056	-				-0.1
2,232,056	-				-0.0
2,232,139	-				-0.2
2,232,139	-				+0.1
2,232,140	-				-2.3
2,232,140	-				-1.8
2,232,149	+				-0.9
2,232,151	+				+1.1
2,232,151	+				-1.8
2,232,151	+				-1.5
2,232,151	+				+0.5
2,232,153	+				+1.2
2,232,155	+				-0.0
2,232,155	+				+0.0
2,232,155	+				+0.3
2,232,159	-				-0.3
2,232,159	-				+0.6
2,232,159	-				+0.1
2,232,161	-				+0.5
2,232,162	+				+0.6
2,232,167	+				+1.4
2,232,170	-				+1.2
2,232,171	+				-0.0
2,232,172	+				-1.0
2,232,205	+	yeiT	b2146	0.12	-1.1
2,232,213	-	yeiT	b2146	0.13	+0.4
2,232,272	+	yeiT	b2146	0.18	-0.3
2,232,278	+	yeiT	b2146	0.18	-0.8
2,232,280	-	yeiT	b2146	0.18	+1.0
2,232,280	-	yeiT	b2146	0.18	+1.2
2,232,311	+	yeiT	b2146	0.21	-1.2
2,232,311	+	yeiT	b2146	0.21	-0.8
2,232,326	+	yeiT	b2146	0.22	-0.1
2,232,326	+	yeiT	b2146	0.22	+0.8
2,232,326	+	yeiT	b2146	0.22	-0.0
2,232,333	-	yeiT	b2146	0.22	+0.2
2,232,333	-	yeiT	b2146	0.22	-0.0
2,232,346	+	yeiT	b2146	0.23	+0.1
2,232,473	+	yeiT	b2146	0.34	+0.3
2,232,575	+	yeiT	b2146	0.42	-0.5