Strain Fitness in Escherichia coli BW25113 around b2291

Experiment: LB Anaerobic Allura Red AC 250 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfbQ and yfbR are separated by 83 nucleotidesyfbR and yfbS are separated by 58 nucleotides b2290: yfbQ - aspartate aminotransferase (NCBI), at 2,405,583 to 2,406,800 yfbQ b2291: yfbR - hypothetical protein (NCBI), at 2,406,884 to 2,407,483 yfbR b2292: yfbS - predicted transporter (NCBI), at 2,407,542 to 2,409,374 yfbS Position (kb) 2406 2407 2408Strain fitness (log2 ratio) -2 -1 0 1 2at 2405.890 kb on + strand, within yfbQat 2405.933 kb on - strand, within yfbQat 2405.958 kb on + strand, within yfbQat 2405.958 kb on + strand, within yfbQat 2405.964 kb on - strand, within yfbQat 2405.971 kb on - strand, within yfbQat 2405.971 kb on - strand, within yfbQat 2405.971 kb on - strand, within yfbQat 2405.971 kb on - strand, within yfbQat 2405.972 kb on + strand, within yfbQat 2405.973 kb on - strand, within yfbQat 2405.976 kb on - strand, within yfbQat 2406.035 kb on + strand, within yfbQat 2406.035 kb on + strand, within yfbQat 2406.045 kb on + strand, within yfbQat 2406.053 kb on - strand, within yfbQat 2406.135 kb on - strand, within yfbQat 2406.136 kb on + strand, within yfbQat 2406.136 kb on + strand, within yfbQat 2406.147 kb on - strand, within yfbQat 2406.147 kb on - strand, within yfbQat 2406.159 kb on + strand, within yfbQat 2406.165 kb on - strand, within yfbQat 2406.179 kb on + strand, within yfbQat 2406.179 kb on + strand, within yfbQat 2406.187 kb on - strand, within yfbQat 2406.334 kb on + strand, within yfbQat 2406.339 kb on + strand, within yfbQat 2406.339 kb on + strand, within yfbQat 2406.347 kb on - strand, within yfbQat 2406.347 kb on - strand, within yfbQat 2406.474 kb on - strand, within yfbQat 2406.584 kb on - strand, within yfbQat 2406.584 kb on - strand, within yfbQat 2406.684 kb on + strandat 2406.692 kb on - strandat 2406.692 kb on - strandat 2406.692 kb on - strandat 2406.692 kb on - strandat 2406.726 kb on - strandat 2406.865 kb on + strandat 2407.100 kb on - strand, within yfbRat 2407.167 kb on - strand, within yfbRat 2407.230 kb on - strand, within yfbRat 2407.256 kb on - strand, within yfbRat 2407.466 kb on - strandat 2407.483 kb on - strandat 2407.483 kb on - strandat 2407.485 kb on - strandat 2407.485 kb on - strandat 2407.558 kb on + strandat 2407.677 kb on - strandat 2407.677 kb on - strandat 2407.769 kb on - strand, within yfbSat 2407.775 kb on + strand, within yfbSat 2407.777 kb on + strand, within yfbSat 2407.806 kb on - strand, within yfbSat 2407.812 kb on - strand, within yfbSat 2407.812 kb on - strand, within yfbSat 2408.014 kb on - strand, within yfbSat 2408.073 kb on + strand, within yfbSat 2408.126 kb on + strand, within yfbSat 2408.145 kb on - strand, within yfbSat 2408.164 kb on - strand, within yfbSat 2408.166 kb on + strand, within yfbSat 2408.191 kb on + strand, within yfbSat 2408.252 kb on + strand, within yfbSat 2408.252 kb on + strand, within yfbSat 2408.275 kb on + strand, within yfbSat 2408.400 kb on + strand, within yfbSat 2408.408 kb on - strand, within yfbSat 2408.408 kb on - strand, within yfbSat 2408.413 kb on - strand, within yfbS

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic Allura Red AC 250 uM
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2,405,890 + yfbQ b2290 0.25 +1.7
2,405,933 - yfbQ b2290 0.29 -0.3
2,405,958 + yfbQ b2290 0.31 -0.7
2,405,958 + yfbQ b2290 0.31 -1.8
2,405,964 - yfbQ b2290 0.31 +0.3
2,405,971 - yfbQ b2290 0.32 +0.4
2,405,971 - yfbQ b2290 0.32 +0.7
2,405,971 - yfbQ b2290 0.32 -0.1
2,405,971 - yfbQ b2290 0.32 +0.8
2,405,972 + yfbQ b2290 0.32 +0.2
2,405,973 - yfbQ b2290 0.32 -0.4
2,405,976 - yfbQ b2290 0.32 +0.4
2,406,035 + yfbQ b2290 0.37 -0.5
2,406,035 + yfbQ b2290 0.37 -0.0
2,406,045 + yfbQ b2290 0.38 +0.8
2,406,053 - yfbQ b2290 0.39 +0.3
2,406,135 - yfbQ b2290 0.45 -0.2
2,406,136 + yfbQ b2290 0.45 +0.4
2,406,136 + yfbQ b2290 0.45 +0.1
2,406,147 - yfbQ b2290 0.46 +0.3
2,406,147 - yfbQ b2290 0.46 -0.0
2,406,159 + yfbQ b2290 0.47 -0.4
2,406,165 - yfbQ b2290 0.48 +0.8
2,406,179 + yfbQ b2290 0.49 +0.3
2,406,179 + yfbQ b2290 0.49 -2.2
2,406,187 - yfbQ b2290 0.50 -0.0
2,406,334 + yfbQ b2290 0.62 +0.4
2,406,339 + yfbQ b2290 0.62 +0.1
2,406,339 + yfbQ b2290 0.62 -0.3
2,406,347 - yfbQ b2290 0.63 +0.8
2,406,347 - yfbQ b2290 0.63 +0.0
2,406,474 - yfbQ b2290 0.73 -0.8
2,406,584 - yfbQ b2290 0.82 -0.5
2,406,584 - yfbQ b2290 0.82 -0.1
2,406,684 + -0.4
2,406,692 - +1.2
2,406,692 - +0.4
2,406,692 - -0.7
2,406,692 - -0.9
2,406,726 - +0.3
2,406,865 + -0.3
2,407,100 - yfbR b2291 0.36 +0.1
2,407,167 - yfbR b2291 0.47 +1.8
2,407,230 - yfbR b2291 0.58 +0.0
2,407,256 - yfbR b2291 0.62 -0.2
2,407,466 - -0.5
2,407,483 - +0.2
2,407,483 - -0.1
2,407,485 - -0.2
2,407,485 - +0.6
2,407,558 + -0.5
2,407,677 - +0.1
2,407,677 - +0.3
2,407,769 - yfbS b2292 0.12 -0.3
2,407,775 + yfbS b2292 0.13 -1.4
2,407,777 + yfbS b2292 0.13 +0.8
2,407,806 - yfbS b2292 0.14 -0.1
2,407,812 - yfbS b2292 0.15 +0.0
2,407,812 - yfbS b2292 0.15 +0.7
2,408,014 - yfbS b2292 0.26 -0.2
2,408,073 + yfbS b2292 0.29 +0.5
2,408,126 + yfbS b2292 0.32 +0.3
2,408,145 - yfbS b2292 0.33 -0.2
2,408,164 - yfbS b2292 0.34 +0.0
2,408,166 + yfbS b2292 0.34 +0.1
2,408,191 + yfbS b2292 0.35 +0.5
2,408,252 + yfbS b2292 0.39 +1.8
2,408,252 + yfbS b2292 0.39 -0.8
2,408,275 + yfbS b2292 0.40 -0.4
2,408,400 + yfbS b2292 0.47 +0.7
2,408,408 - yfbS b2292 0.47 +0.6
2,408,408 - yfbS b2292 0.47 +0.5
2,408,413 - yfbS b2292 0.48 +0.3

Or see this region's nucleotide sequence