Strain Fitness in Escherichia coli BW25113 around b3658

Experiment: LB Anaerobic Sulfasalazine 250 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyicJ and selC are separated by 292 nucleotidesselC and yicT are separated by 108 nucleotidesyicT and setC are separated by 396 nucleotides b3657: yicJ - putative permease (VIMSS), at 3,832,570 to 3,833,952 yicJ b3658: selC - tRNA-Sec (NCBI), at 3,834,245 to 3,834,339 selC b4653: yicT - no description, at 3,834,448 to 3,834,579 yicT b3659: setC - predicted sugar efflux system (NCBI), at 3,834,976 to 3,836,160 setC Position (kb) 3834 3835Strain fitness (log2 ratio) -1 0 1at 3833.320 kb on - strand, within yicJat 3833.320 kb on - strand, within yicJat 3833.320 kb on - strand, within yicJat 3833.401 kb on + strand, within yicJat 3833.448 kb on + strand, within yicJat 3833.468 kb on - strand, within yicJat 3833.468 kb on - strand, within yicJat 3833.488 kb on + strand, within yicJat 3833.524 kb on - strand, within yicJat 3833.665 kb on - strand, within yicJat 3833.675 kb on - strand, within yicJat 3833.675 kb on - strand, within yicJat 3833.683 kb on + strand, within yicJat 3833.703 kb on + strand, within yicJat 3833.755 kb on - strand, within yicJat 3833.757 kb on - strand, within yicJat 3833.781 kb on + strand, within yicJat 3833.781 kb on + strand, within yicJat 3833.784 kb on + strand, within yicJat 3833.784 kb on + strand, within yicJat 3833.901 kb on + strandat 3833.932 kb on + strandat 3833.932 kb on + strandat 3833.953 kb on - strandat 3833.966 kb on + strandat 3833.969 kb on + strandat 3833.969 kb on + strandat 3833.969 kb on + strandat 3833.972 kb on + strandat 3834.058 kb on + strandat 3834.123 kb on + strandat 3834.150 kb on - strandat 3834.150 kb on - strandat 3834.202 kb on - strandat 3834.203 kb on + strandat 3834.225 kb on + strandat 3834.225 kb on + strandat 3834.269 kb on - strand, within selCat 3834.312 kb on - strand, within selCat 3834.314 kb on + strand, within selCat 3834.367 kb on + strandat 3834.367 kb on + strandat 3834.381 kb on - strandat 3834.381 kb on - strandat 3834.423 kb on + strandat 3834.425 kb on - strandat 3834.433 kb on + strandat 3834.441 kb on - strandat 3834.462 kb on + strand, within yicTat 3834.509 kb on - strand, within yicTat 3834.509 kb on - strand, within yicTat 3834.564 kb on + strand, within yicTat 3834.566 kb on + strandat 3834.566 kb on - strandat 3834.567 kb on - strandat 3834.567 kb on - strandat 3834.568 kb on + strandat 3834.568 kb on + strandat 3834.570 kb on + strandat 3834.570 kb on + strandat 3834.576 kb on - strandat 3834.577 kb on + strandat 3834.583 kb on + strandat 3834.591 kb on + strandat 3834.612 kb on + strandat 3834.612 kb on + strandat 3834.620 kb on - strandat 3834.920 kb on - strandat 3834.996 kb on - strandat 3834.996 kb on - strandat 3835.055 kb on - strandat 3835.055 kb on - strandat 3835.069 kb on + strandat 3835.076 kb on + strandat 3835.113 kb on + strand, within setCat 3835.118 kb on + strand, within setCat 3835.118 kb on + strand, within setCat 3835.126 kb on - strand, within setCat 3835.127 kb on - strand, within setCat 3835.127 kb on - strand, within setCat 3835.129 kb on - strand, within setCat 3835.129 kb on - strand, within setCat 3835.154 kb on - strand, within setCat 3835.154 kb on - strand, within setCat 3835.155 kb on - strand, within setCat 3835.155 kb on - strand, within setCat 3835.196 kb on + strand, within setCat 3835.196 kb on + strand, within setCat 3835.198 kb on - strand, within setCat 3835.198 kb on - strand, within setCat 3835.204 kb on - strand, within setCat 3835.204 kb on - strand, within setCat 3835.204 kb on - strand, within setCat 3835.224 kb on - strand, within setCat 3835.224 kb on - strand, within setCat 3835.224 kb on - strand, within setCat 3835.236 kb on - strand, within setCat 3835.257 kb on - strand, within setCat 3835.257 kb on - strand, within setCat 3835.259 kb on - strand, within setCat 3835.259 kb on - strand, within setCat 3835.283 kb on - strand, within setCat 3835.291 kb on + strand, within setCat 3835.304 kb on - strand, within setCat 3835.304 kb on - strand, within setCat 3835.306 kb on - strand, within setCat 3835.314 kb on - strand, within setC

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic Sulfasalazine 250 uM
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3,833,320 - yicJ b3657 0.54 +0.5
3,833,320 - yicJ b3657 0.54 -0.3
3,833,320 - yicJ b3657 0.54 -0.3
3,833,401 + yicJ b3657 0.60 -0.1
3,833,448 + yicJ b3657 0.63 +0.4
3,833,468 - yicJ b3657 0.65 -0.8
3,833,468 - yicJ b3657 0.65 +0.3
3,833,488 + yicJ b3657 0.66 +0.1
3,833,524 - yicJ b3657 0.69 +0.2
3,833,665 - yicJ b3657 0.79 +0.2
3,833,675 - yicJ b3657 0.80 +0.8
3,833,675 - yicJ b3657 0.80 -0.3
3,833,683 + yicJ b3657 0.80 +0.1
3,833,703 + yicJ b3657 0.82 +0.2
3,833,755 - yicJ b3657 0.86 +0.0
3,833,757 - yicJ b3657 0.86 -0.2
3,833,781 + yicJ b3657 0.88 -0.2
3,833,781 + yicJ b3657 0.88 +0.2
3,833,784 + yicJ b3657 0.88 -0.0
3,833,784 + yicJ b3657 0.88 +0.3
3,833,901 + +0.2
3,833,932 + +0.0
3,833,932 + +0.1
3,833,953 - +0.3
3,833,966 + -0.2
3,833,969 + -0.7
3,833,969 + -0.5
3,833,969 + +0.2
3,833,972 + -0.1
3,834,058 + +0.3
3,834,123 + +0.8
3,834,150 - -0.1
3,834,150 - -0.3
3,834,202 - +1.0
3,834,203 + -0.2
3,834,225 + +0.4
3,834,225 + +0.1
3,834,269 - selC b3658 0.25 +0.5
3,834,312 - selC b3658 0.71 +0.1
3,834,314 + selC b3658 0.73 +0.3
3,834,367 + +0.6
3,834,367 + +0.7
3,834,381 - +0.0
3,834,381 - +0.9
3,834,423 + -0.2
3,834,425 - -0.7
3,834,433 + +0.3
3,834,441 - -0.1
3,834,462 + yicT b4653 0.11 -0.4
3,834,509 - yicT b4653 0.46 -0.2
3,834,509 - yicT b4653 0.46 -0.2
3,834,564 + yicT b4653 0.88 -0.1
3,834,566 + +0.2
3,834,566 - -0.8
3,834,567 - -0.4
3,834,567 - +0.8
3,834,568 + +0.3
3,834,568 + -0.1
3,834,570 + -0.6
3,834,570 + -1.6
3,834,576 - -0.2
3,834,577 + -0.1
3,834,583 + -0.7
3,834,591 + +0.2
3,834,612 + +0.5
3,834,612 + +0.3
3,834,620 - +1.6
3,834,920 - +1.6
3,834,996 - +0.6
3,834,996 - +1.6
3,835,055 - +1.6
3,835,055 - +1.2
3,835,069 + +1.6
3,835,076 + +0.1
3,835,113 + setC b3659 0.12 -1.6
3,835,118 + setC b3659 0.12 -1.0
3,835,118 + setC b3659 0.12 +1.0
3,835,126 - setC b3659 0.13 +1.2
3,835,127 - setC b3659 0.13 -0.5
3,835,127 - setC b3659 0.13 -1.2
3,835,129 - setC b3659 0.13 +1.6
3,835,129 - setC b3659 0.13 -0.4
3,835,154 - setC b3659 0.15 +0.1
3,835,154 - setC b3659 0.15 -0.6
3,835,155 - setC b3659 0.15 +0.6
3,835,155 - setC b3659 0.15 +1.2
3,835,196 + setC b3659 0.19 +1.6
3,835,196 + setC b3659 0.19 +1.6
3,835,198 - setC b3659 0.19 +1.3
3,835,198 - setC b3659 0.19 +1.4
3,835,204 - setC b3659 0.19 -0.1
3,835,204 - setC b3659 0.19 +0.3
3,835,204 - setC b3659 0.19 +1.0
3,835,224 - setC b3659 0.21 -0.1
3,835,224 - setC b3659 0.21 -0.4
3,835,224 - setC b3659 0.21 +1.2
3,835,236 - setC b3659 0.22 +1.6
3,835,257 - setC b3659 0.24 +0.1
3,835,257 - setC b3659 0.24 +0.8
3,835,259 - setC b3659 0.24 +0.2
3,835,259 - setC b3659 0.24 +0.1
3,835,283 - setC b3659 0.26 +0.5
3,835,291 + setC b3659 0.27 +1.0
3,835,304 - setC b3659 0.28 +0.2
3,835,304 - setC b3659 0.28 -0.2
3,835,306 - setC b3659 0.28 +0.3
3,835,314 - setC b3659 0.29 -0.3

Or see this region's nucleotide sequence