Strain Fitness in Escherichia coli BW25113 around b1431

Experiment: LB Anaerobic Sulfasalazine 250 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttehA and tehB overlap by 4 nucleotidestehB and ydcL are separated by 301 nucleotidesydcL and insP are separated by 92 nucleotidesinsP and insQ are separated by 67 nucleotides b1429: tehA - potassium-tellurite ethidium and proflavin transporter (NCBI), at 1,498,597 to 1,499,589 tehA b1430: tehB - predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI), at 1,499,586 to 1,500,179 tehB b1431: ydcL - predicted lipoprotein (NCBI), at 1,500,481 to 1,501,149 ydcL b4578: insP - no description, at 1,501,242 to 1,501,673 insP b1432: insQ - IS609 transposase B (RefSeq), at 1,501,741 to 1,502,889 insQ Position (kb) 1500 1501 1502Strain fitness (log2 ratio) -2 -1 0 1at 1499.640 kb on + strandat 1499.650 kb on - strand, within tehBat 1499.699 kb on - strand, within tehBat 1499.709 kb on - strand, within tehBat 1499.726 kb on + strand, within tehBat 1499.741 kb on - strand, within tehBat 1499.831 kb on - strand, within tehBat 1499.859 kb on - strand, within tehBat 1499.991 kb on + strand, within tehBat 1499.991 kb on + strand, within tehBat 1500.069 kb on + strand, within tehBat 1500.069 kb on + strand, within tehBat 1500.113 kb on - strand, within tehBat 1500.128 kb on + strandat 1500.128 kb on + strandat 1500.191 kb on - strandat 1500.191 kb on - strandat 1500.496 kb on - strandat 1500.496 kb on - strandat 1500.540 kb on - strandat 1500.542 kb on - strandat 1500.685 kb on + strand, within ydcLat 1500.726 kb on + strand, within ydcLat 1500.762 kb on + strand, within ydcLat 1500.946 kb on + strand, within ydcLat 1501.107 kb on + strandat 1501.107 kb on + strandat 1501.126 kb on - strandat 1501.226 kb on - strandat 1501.226 kb on - strandat 1501.257 kb on + strandat 1501.305 kb on - strand, within insPat 1501.305 kb on - strand, within insPat 1501.361 kb on - strand, within insPat 1501.430 kb on - strand, within insPat 1501.472 kb on - strand, within insPat 1501.681 kb on + strandat 1501.681 kb on + strandat 1501.929 kb on + strand, within insQ

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic Sulfasalazine 250 uM
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1,499,640 + -2.3
1,499,650 - tehB b1430 0.11 -0.8
1,499,699 - tehB b1430 0.19 +1.5
1,499,709 - tehB b1430 0.21 -0.3
1,499,726 + tehB b1430 0.24 -1.0
1,499,741 - tehB b1430 0.26 -1.1
1,499,831 - tehB b1430 0.41 +0.5
1,499,859 - tehB b1430 0.46 -0.2
1,499,991 + tehB b1430 0.68 -0.0
1,499,991 + tehB b1430 0.68 -0.9
1,500,069 + tehB b1430 0.81 +0.3
1,500,069 + tehB b1430 0.81 -0.8
1,500,113 - tehB b1430 0.89 +1.1
1,500,128 + +0.3
1,500,128 + +0.1
1,500,191 - -1.4
1,500,191 - -0.0
1,500,496 - +0.2
1,500,496 - +0.1
1,500,540 - +1.5
1,500,542 - +0.0
1,500,685 + ydcL b1431 0.30 +0.8
1,500,726 + ydcL b1431 0.37 +0.1
1,500,762 + ydcL b1431 0.42 -0.3
1,500,946 + ydcL b1431 0.70 +0.5
1,501,107 + +0.4
1,501,107 + +0.0
1,501,126 - +1.0
1,501,226 - -0.1
1,501,226 - -0.2
1,501,257 + +0.2
1,501,305 - insP b4578 0.15 -0.0
1,501,305 - insP b4578 0.15 +0.3
1,501,361 - insP b4578 0.28 +0.3
1,501,430 - insP b4578 0.44 -0.2
1,501,472 - insP b4578 0.53 +0.4
1,501,681 + -0.0
1,501,681 + +0.3
1,501,929 + insQ b1432 0.16 +0.2

Or see this region's nucleotide sequence