Strain Fitness in Escherichia coli BW25113 around b4402

Experiment: LB Anaerobic Sulfasalazine 250 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcreD and arcA are separated by 59 nucleotidesarcA and yjjY are separated by 95 nucleotidesyjjY and yjtD are separated by 399 nucleotides b4400: creD - inner membrane protein (NCBI), at 4,636,201 to 4,637,553 creD b4401: arcA - DNA-binding response regulator in two-component regulatory system with ArcB or CpxA (NCBI), at 4,637,613 to 4,638,329 arcA b4402: yjjY - hypothetical protein (NCBI), at 4,638,425 to 4,638,565 yjjY b4403: yjtD - predicted rRNA methyltransferase (NCBI), at 4,638,965 to 4,639,651 yjtD Position (kb) 4638 4639Strain fitness (log2 ratio) -1 0 1 2at 4637.462 kb on + strandat 4637.463 kb on + strandat 4638.330 kb on - strandat 4638.434 kb on + strandat 4638.491 kb on + strand, within yjjYat 4638.491 kb on + strand, within yjjYat 4638.568 kb on + strandat 4638.577 kb on - strandat 4638.579 kb on + strandat 4638.928 kb on + strandat 4639.075 kb on + strand, within yjtDat 4639.075 kb on + strand, within yjtDat 4639.207 kb on - strand, within yjtDat 4639.207 kb on - strand, within yjtDat 4639.230 kb on - strand, within yjtDat 4639.274 kb on + strand, within yjtDat 4639.321 kb on + strand, within yjtDat 4639.321 kb on + strand, within yjtDat 4639.329 kb on - strand, within yjtDat 4639.385 kb on - strand, within yjtDat 4639.385 kb on - strand, within yjtDat 4639.476 kb on + strand, within yjtDat 4639.523 kb on + strand, within yjtDat 4639.560 kb on + strand, within yjtD

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic Sulfasalazine 250 uM
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4,637,462 + +0.1
4,637,463 + +0.9
4,638,330 - +1.1
4,638,434 + -0.8
4,638,491 + yjjY b4402 0.47 +0.3
4,638,491 + yjjY b4402 0.47 +0.6
4,638,568 + -1.0
4,638,577 - -0.5
4,638,579 + +1.8
4,638,928 + +0.2
4,639,075 + yjtD b4403 0.16 +0.6
4,639,075 + yjtD b4403 0.16 +0.1
4,639,207 - yjtD b4403 0.35 +0.6
4,639,207 - yjtD b4403 0.35 +0.2
4,639,230 - yjtD b4403 0.39 -1.2
4,639,274 + yjtD b4403 0.45 +0.4
4,639,321 + yjtD b4403 0.52 +0.7
4,639,321 + yjtD b4403 0.52 +0.5
4,639,329 - yjtD b4403 0.53 -1.0
4,639,385 - yjtD b4403 0.61 +0.1
4,639,385 - yjtD b4403 0.61 -0.6
4,639,476 + yjtD b4403 0.74 +0.6
4,639,523 + yjtD b4403 0.81 +0.3
4,639,560 + yjtD b4403 0.87 +0.2

Or see this region's nucleotide sequence