Strain Fitness in Escherichia coli BW25113 around b2587

Experiment: M9 Aerobic 5-Fluorodihydropyrimidine-2,4-dione 500 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpssA and yfiM are separated by 45 nucleotidesyfiM and kgtP overlap by 4 nucleotideskgtP and rrfG are separated by 322 nucleotidesrrfG and rrlG are separated by 92 nucleotides b2585: pssA - phosphatidylserine synthase; phospholipid synthesis (VIMSS), at 2,720,749 to 2,722,104 pssA b2586: yfiM - predicted protein (RefSeq), at 2,722,150 to 2,722,473 yfiM b2587: kgtP - alpha-ketoglutarate transporter (NCBI), at 2,722,470 to 2,723,768 kgtP b2588: rrfG - 5S ribosomal RNA (NCBI), at 2,724,091 to 2,724,210 rrfG b2589: rrlG - 23S ribosomal RNA (NCBI), at 2,724,303 to 2,727,206 rrlG Position (kb) 2722 2723 2724Strain fitness (log2 ratio) -2 -1 0 1at 2722.110 kb on + strandat 2722.113 kb on - strandat 2722.115 kb on + strandat 2722.171 kb on + strandat 2722.227 kb on + strand, within yfiMat 2722.332 kb on + strand, within yfiMat 2722.387 kb on - strand, within yfiMat 2722.415 kb on + strand, within yfiMat 2722.435 kb on + strand, within yfiMat 2722.539 kb on - strandat 2722.539 kb on - strandat 2722.557 kb on + strandat 2722.557 kb on + strandat 2722.570 kb on + strandat 2722.604 kb on - strand, within kgtPat 2722.604 kb on - strand, within kgtPat 2722.633 kb on + strand, within kgtPat 2722.641 kb on - strand, within kgtPat 2722.783 kb on + strand, within kgtPat 2722.801 kb on + strand, within kgtPat 2722.943 kb on + strand, within kgtPat 2722.943 kb on + strand, within kgtPat 2723.060 kb on - strand, within kgtPat 2723.060 kb on - strand, within kgtPat 2723.145 kb on + strand, within kgtPat 2723.210 kb on - strand, within kgtPat 2723.235 kb on + strand, within kgtPat 2723.348 kb on - strand, within kgtPat 2723.408 kb on - strand, within kgtPat 2723.418 kb on + strand, within kgtPat 2723.418 kb on + strand, within kgtPat 2723.436 kb on + strand, within kgtPat 2723.457 kb on - strand, within kgtPat 2723.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 Aerobic 5-Fluorodihydropyrimidine-2,4-dione 500 uM
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2,722,110 + -0.0
2,722,113 - -0.2
2,722,115 + -0.2
2,722,171 + -0.2
2,722,227 + yfiM b2586 0.24 +0.1
2,722,332 + yfiM b2586 0.56 +0.5
2,722,387 - yfiM b2586 0.73 -0.1
2,722,415 + yfiM b2586 0.82 +0.1
2,722,435 + yfiM b2586 0.88 -2.1
2,722,539 - +0.0
2,722,539 - -0.6
2,722,557 + -0.1
2,722,557 + -0.1
2,722,570 + +1.2
2,722,604 - kgtP b2587 0.10 +0.5
2,722,604 - kgtP b2587 0.10 +0.4
2,722,633 + kgtP b2587 0.13 +0.3
2,722,641 - kgtP b2587 0.13 -1.3
2,722,783 + kgtP b2587 0.24 -0.5
2,722,801 + kgtP b2587 0.25 -0.2
2,722,943 + kgtP b2587 0.36 +0.4
2,722,943 + kgtP b2587 0.36 +1.1
2,723,060 - kgtP b2587 0.45 +0.5
2,723,060 - kgtP b2587 0.45 -0.1
2,723,145 + kgtP b2587 0.52 +1.2
2,723,210 - kgtP b2587 0.57 +0.1
2,723,235 + kgtP b2587 0.59 +0.2
2,723,348 - kgtP b2587 0.68 +0.5
2,723,408 - kgtP b2587 0.72 -0.3
2,723,418 + kgtP b2587 0.73 +0.2
2,723,418 + kgtP b2587 0.73 +0.9
2,723,436 + kgtP b2587 0.74 +0.6
2,723,457 - kgtP b2587 0.76 +0.1
2,723,698 - -0.2

Or see this region's nucleotide sequence