Strain Fitness in Escherichia coli BW25113 around b1773

Experiment: M9 Aerobic 5'-Deoxy-5-fluorocytidine 500 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjG and b1772 are separated by 9 nucleotidesb1772 and ydjI are separated by 4 nucleotidesydjI and ydjJ are separated by 20 nucleotides b1771: ydjG - predicted oxidoreductase (NCBI), at 1,853,015 to 1,853,995 ydjG b1772: b1772 - putative kinase (VIMSS), at 1,854,005 to 1,854,952 b1772 b1773: ydjI - predicted aldolase (NCBI), at 1,854,957 to 1,855,793 ydjI b1774: ydjJ - predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI), at 1,855,814 to 1,856,857 ydjJ Position (kb) 1854 1855 1856Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1854.143 kb on - strand, within b1772at 1854.143 kb on - strand, within b1772at 1854.178 kb on - strand, within b1772at 1854.178 kb on - strand, within b1772at 1854.223 kb on - strand, within b1772at 1854.246 kb on - strand, within b1772at 1854.321 kb on - strand, within b1772at 1854.389 kb on + strand, within b1772at 1854.397 kb on - strand, within b1772at 1854.425 kb on - strand, within b1772at 1854.425 kb on - strand, within b1772at 1854.461 kb on - strand, within b1772at 1854.461 kb on - strand, within b1772at 1854.550 kb on - strand, within b1772at 1854.626 kb on + strand, within b1772at 1854.626 kb on + strand, within b1772at 1854.644 kb on - strand, within b1772at 1854.644 kb on - strand, within b1772at 1854.651 kb on + strand, within b1772at 1854.652 kb on + strand, within b1772at 1854.670 kb on + strand, within b1772at 1854.670 kb on + strand, within b1772at 1854.935 kb on - strandat 1854.935 kb on - strandat 1855.036 kb on - strandat 1855.081 kb on - strand, within ydjIat 1855.087 kb on - strand, within ydjIat 1855.097 kb on - strand, within ydjIat 1855.184 kb on - strand, within ydjIat 1855.298 kb on - strand, within ydjIat 1855.333 kb on + strand, within ydjIat 1855.336 kb on + strand, within ydjIat 1855.336 kb on + strand, within ydjIat 1855.341 kb on + strand, within ydjIat 1855.378 kb on + strand, within ydjIat 1855.403 kb on + strand, within ydjIat 1855.411 kb on + strand, within ydjIat 1855.525 kb on + strand, within ydjIat 1855.550 kb on + strand, within ydjIat 1855.591 kb on + strand, within ydjIat 1855.593 kb on + strand, within ydjIat 1855.593 kb on + strand, within ydjIat 1855.868 kb on - strandat 1855.880 kb on - strandat 1855.890 kb on - strandat 1855.890 kb on - strandat 1855.907 kb on - strandat 1855.944 kb on - strand, within ydjJat 1855.944 kb on - strand, within ydjJat 1855.973 kb on - strand, within ydjJat 1855.973 kb on - strand, within ydjJat 1855.973 kb on - strand, within ydjJat 1855.974 kb on - strand, within ydjJat 1855.985 kb on - strand, within ydjJat 1855.985 kb on - strand, within ydjJat 1855.985 kb on - strand, within ydjJat 1855.985 kb on - strand, within ydjJat 1855.990 kb on - strand, within ydjJat 1855.990 kb on - strand, within ydjJat 1856.001 kb on - strand, within ydjJat 1856.050 kb on - strand, within ydjJat 1856.050 kb on - strand, within ydjJat 1856.052 kb on + strand, within ydjJat 1856.060 kb on - strand, within ydjJat 1856.096 kb on - strand, within ydjJat 1856.096 kb on - strand, within ydjJat 1856.107 kb on - strand, within ydjJat 1856.107 kb on - strand, within ydjJat 1856.109 kb on - strand, within ydjJat 1856.174 kb on - strand, within ydjJat 1856.174 kb on - strand, within ydjJat 1856.209 kb on - strand, within ydjJat 1856.209 kb on - strand, within ydjJat 1856.322 kb on - strand, within ydjJat 1856.381 kb on + strand, within ydjJat 1856.473 kb on + strand, within ydjJat 1856.534 kb on + strand, within ydjJat 1856.633 kb on + strand, within ydjJat 1856.636 kb on - strand, within ydjJat 1856.639 kb on + strand, within ydjJat 1856.639 kb on + strand, within ydjJat 1856.639 kb on + strand, within ydjJat 1856.639 kb on + strand, within ydjJat 1856.647 kb on - strand, within ydjJat 1856.647 kb on - strand, within ydjJat 1856.647 kb on - strand, within ydjJat 1856.647 kb on - strand, within ydjJat 1856.660 kb on + strand, within ydjJ

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 Aerobic 5'-Deoxy-5-fluorocytidine 500 uM
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1,854,143 - b1772 b1772 0.15 -0.0
1,854,143 - b1772 b1772 0.15 +0.5
1,854,178 - b1772 b1772 0.18 -0.8
1,854,178 - b1772 b1772 0.18 -0.6
1,854,223 - b1772 b1772 0.23 -0.1
1,854,246 - b1772 b1772 0.25 +0.3
1,854,321 - b1772 b1772 0.33 +1.2
1,854,389 + b1772 b1772 0.41 +1.2
1,854,397 - b1772 b1772 0.41 +1.8
1,854,425 - b1772 b1772 0.44 +0.5
1,854,425 - b1772 b1772 0.44 +0.8
1,854,461 - b1772 b1772 0.48 +2.8
1,854,461 - b1772 b1772 0.48 +0.8
1,854,550 - b1772 b1772 0.57 +2.8
1,854,626 + b1772 b1772 0.66 +2.8
1,854,626 + b1772 b1772 0.66 +2.8
1,854,644 - b1772 b1772 0.67 +1.8
1,854,644 - b1772 b1772 0.67 +2.8
1,854,651 + b1772 b1772 0.68 +2.8
1,854,652 + b1772 b1772 0.68 +2.8
1,854,670 + b1772 b1772 0.70 +2.8
1,854,670 + b1772 b1772 0.70 +2.8
1,854,935 - +2.8
1,854,935 - +2.8
1,855,036 - +0.2
1,855,081 - ydjI b1773 0.15 -0.9
1,855,087 - ydjI b1773 0.16 +2.5
1,855,097 - ydjI b1773 0.17 +1.6
1,855,184 - ydjI b1773 0.27 -0.0
1,855,298 - ydjI b1773 0.41 +2.8
1,855,333 + ydjI b1773 0.45 +1.8
1,855,336 + ydjI b1773 0.45 +1.8
1,855,336 + ydjI b1773 0.45 +2.8
1,855,341 + ydjI b1773 0.46 +2.8
1,855,378 + ydjI b1773 0.50 +2.8
1,855,403 + ydjI b1773 0.53 +2.8
1,855,411 + ydjI b1773 0.54 +2.8
1,855,525 + ydjI b1773 0.68 +2.8
1,855,550 + ydjI b1773 0.71 +2.8
1,855,591 + ydjI b1773 0.76 +2.8
1,855,593 + ydjI b1773 0.76 +1.8
1,855,593 + ydjI b1773 0.76 +1.8
1,855,868 - -0.9
1,855,880 - -0.0
1,855,890 - +0.3
1,855,890 - -0.2
1,855,907 - -0.4
1,855,944 - ydjJ b1774 0.12 -0.5
1,855,944 - ydjJ b1774 0.12 +0.4
1,855,973 - ydjJ b1774 0.15 -0.1
1,855,973 - ydjJ b1774 0.15 +0.4
1,855,973 - ydjJ b1774 0.15 -0.9
1,855,974 - ydjJ b1774 0.15 -1.1
1,855,985 - ydjJ b1774 0.16 -1.0
1,855,985 - ydjJ b1774 0.16 -0.4
1,855,985 - ydjJ b1774 0.16 +0.1
1,855,985 - ydjJ b1774 0.16 -0.3
1,855,990 - ydjJ b1774 0.17 -1.3
1,855,990 - ydjJ b1774 0.17 -1.4
1,856,001 - ydjJ b1774 0.18 +0.2
1,856,050 - ydjJ b1774 0.23 +1.1
1,856,050 - ydjJ b1774 0.23 +0.1
1,856,052 + ydjJ b1774 0.23 +1.2
1,856,060 - ydjJ b1774 0.24 +0.4
1,856,096 - ydjJ b1774 0.27 -0.0
1,856,096 - ydjJ b1774 0.27 -1.3
1,856,107 - ydjJ b1774 0.28 +1.5
1,856,107 - ydjJ b1774 0.28 -0.5
1,856,109 - ydjJ b1774 0.28 +1.6
1,856,174 - ydjJ b1774 0.34 -0.6
1,856,174 - ydjJ b1774 0.34 +0.1
1,856,209 - ydjJ b1774 0.38 -0.1
1,856,209 - ydjJ b1774 0.38 -0.2
1,856,322 - ydjJ b1774 0.49 -1.9
1,856,381 + ydjJ b1774 0.54 +0.4
1,856,473 + ydjJ b1774 0.63 +1.2
1,856,534 + ydjJ b1774 0.69 -1.1
1,856,633 + ydjJ b1774 0.78 +3.8
1,856,636 - ydjJ b1774 0.79 +1.3
1,856,639 + ydjJ b1774 0.79 +2.2
1,856,639 + ydjJ b1774 0.79 +0.2
1,856,639 + ydjJ b1774 0.79 +2.8
1,856,639 + ydjJ b1774 0.79 +1.2
1,856,647 - ydjJ b1774 0.80 +0.9
1,856,647 - ydjJ b1774 0.80 +0.2
1,856,647 - ydjJ b1774 0.80 +0.6
1,856,647 - ydjJ b1774 0.80 +0.8
1,856,660 + ydjJ b1774 0.81 -0.0

Or see this region's nucleotide sequence