Strain Fitness in Escherichia coli BW25113 around b2954

Experiment: M9 Anaerobic Capecitabine 500 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyggS and yggT are separated by 17 nucleotidesyggT and yggU overlap by 4 nucleotidesyggU and yggV are separated by 7 nucleotidesyggV and yggW overlap by 8 nucleotides b2951: yggS - predicted enzyme (NCBI), at 3,093,120 to 3,093,824 yggS b2952: yggT - predicted inner membrane protein (NCBI), at 3,093,842 to 3,094,408 yggT b2953: yggU - orf, hypothetical protein (VIMSS), at 3,094,405 to 3,094,695 yggU b2954: yggV - putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI), at 3,094,703 to 3,095,296 yggV b2955: yggW - coproporphyrinogen III oxidase (NCBI), at 3,095,289 to 3,096,425 yggW Position (kb) 3094 3095 3096Strain fitness (log2 ratio) -1 0 1at 3093.729 kb on - strand, within yggSat 3093.855 kb on - strandat 3093.855 kb on - strandat 3093.883 kb on + strandat 3093.891 kb on - strandat 3093.930 kb on - strand, within yggTat 3093.930 kb on - strand, within yggTat 3093.940 kb on - strand, within yggTat 3094.022 kb on + strand, within yggTat 3094.067 kb on - strand, within yggTat 3094.089 kb on - strand, within yggTat 3094.089 kb on - strand, within yggTat 3094.290 kb on + strand, within yggTat 3094.319 kb on + strand, within yggTat 3094.324 kb on + strand, within yggTat 3094.333 kb on + strand, within yggTat 3094.333 kb on + strand, within yggTat 3094.391 kb on - strandat 3094.400 kb on + strandat 3094.400 kb on + strandat 3094.451 kb on + strand, within yggUat 3094.451 kb on + strand, within yggUat 3094.542 kb on + strand, within yggUat 3094.775 kb on + strand, within yggVat 3094.879 kb on + strand, within yggVat 3094.920 kb on - strand, within yggVat 3094.948 kb on + strand, within yggVat 3095.006 kb on + strand, within yggVat 3095.095 kb on - strand, within yggVat 3095.115 kb on + strand, within yggVat 3095.136 kb on + strand, within yggVat 3095.299 kb on - strandat 3095.380 kb on + strandat 3095.409 kb on - strand, within yggWat 3095.442 kb on - strand, within yggWat 3095.448 kb on + strand, within yggWat 3095.456 kb on - strand, within yggWat 3095.485 kb on + strand, within yggWat 3095.609 kb on - strand, within yggWat 3095.661 kb on - strand, within yggWat 3095.757 kb on - strand, within yggWat 3095.844 kb on - strand, within yggWat 3095.886 kb on + strand, within yggWat 3095.902 kb on + strand, within yggWat 3096.070 kb on - strand, within yggWat 3096.104 kb on - strand, within yggWat 3096.146 kb on + strand, within yggWat 3096.179 kb on - strand, within yggWat 3096.242 kb on + strand, within yggWat 3096.242 kb on + strand, within yggWat 3096.281 kb on - strand, within yggW

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 Anaerobic Capecitabine 500 uM
remove
3,093,729 - yggS b2951 0.86 +0.5
3,093,855 - -0.4
3,093,855 - +0.2
3,093,883 + -0.1
3,093,891 - -0.5
3,093,930 - yggT b2952 0.16 -0.0
3,093,930 - yggT b2952 0.16 +0.2
3,093,940 - yggT b2952 0.17 -0.2
3,094,022 + yggT b2952 0.32 -0.4
3,094,067 - yggT b2952 0.40 +0.1
3,094,089 - yggT b2952 0.44 +0.3
3,094,089 - yggT b2952 0.44 -0.3
3,094,290 + yggT b2952 0.79 +0.1
3,094,319 + yggT b2952 0.84 -0.6
3,094,324 + yggT b2952 0.85 -0.7
3,094,333 + yggT b2952 0.87 +0.0
3,094,333 + yggT b2952 0.87 -0.4
3,094,391 - -0.1
3,094,400 + +0.5
3,094,400 + +0.6
3,094,451 + yggU b2953 0.16 +0.1
3,094,451 + yggU b2953 0.16 +0.1
3,094,542 + yggU b2953 0.47 -0.0
3,094,775 + yggV b2954 0.12 +0.2
3,094,879 + yggV b2954 0.30 +0.3
3,094,920 - yggV b2954 0.37 -0.2
3,094,948 + yggV b2954 0.41 -0.0
3,095,006 + yggV b2954 0.51 -0.3
3,095,095 - yggV b2954 0.66 -0.1
3,095,115 + yggV b2954 0.69 -0.2
3,095,136 + yggV b2954 0.73 +0.3
3,095,299 - -0.0
3,095,380 + -0.2
3,095,409 - yggW b2955 0.11 -0.9
3,095,442 - yggW b2955 0.13 -0.1
3,095,448 + yggW b2955 0.14 -0.1
3,095,456 - yggW b2955 0.15 -0.1
3,095,485 + yggW b2955 0.17 +0.3
3,095,609 - yggW b2955 0.28 -0.1
3,095,661 - yggW b2955 0.33 -0.4
3,095,757 - yggW b2955 0.41 +0.6
3,095,844 - yggW b2955 0.49 -1.0
3,095,886 + yggW b2955 0.53 -0.1
3,095,902 + yggW b2955 0.54 -0.1
3,096,070 - yggW b2955 0.69 -0.6
3,096,104 - yggW b2955 0.72 -0.9
3,096,146 + yggW b2955 0.75 +0.7
3,096,179 - yggW b2955 0.78 -0.5
3,096,242 + yggW b2955 0.84 +0.2
3,096,242 + yggW b2955 0.84 +0.4
3,096,281 - yggW b2955 0.87 -0.4

Or see this region's nucleotide sequence