Strain Fitness in Escherichia coli BW25113 around b1343

Experiment: M9 Anaerobic Capecitabine 500 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydaN and fnrS are separated by 95 nucleotidesfnrS and dbpA are separated by 260 nucleotidesdbpA and ydaO are separated by 128 nucleotides b1342: ydaN - zinc transporter (NCBI), at 1,406,074 to 1,407,057 ydaN b4699: fnrS - FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq), at 1,407,153 to 1,407,274 fnrS b1343: dbpA - ATP-dependent RNA helicase, specific for 23S rRNA (NCBI), at 1,407,535 to 1,408,908 dbpA b1344: ydaO - predicted C32 tRNA thiolase (NCBI), at 1,409,037 to 1,409,972 ydaO Position (kb) 1407 1408 1409Strain fitness (log2 ratio) -1 0 1at 1406.622 kb on + strand, within ydaNat 1406.678 kb on - strand, within ydaNat 1406.727 kb on + strand, within ydaNat 1406.727 kb on + strand, within ydaNat 1406.783 kb on + strand, within ydaNat 1406.812 kb on - strand, within ydaNat 1406.814 kb on - strand, within ydaNat 1406.822 kb on - strand, within ydaNat 1406.876 kb on + strand, within ydaNat 1406.879 kb on - strand, within ydaNat 1406.879 kb on - strand, within ydaNat 1407.150 kb on - strandat 1407.225 kb on - strand, within fnrSat 1407.299 kb on - strandat 1407.384 kb on + strandat 1407.384 kb on + strandat 1407.421 kb on + strandat 1407.429 kb on - strandat 1407.799 kb on + strand, within dbpAat 1408.018 kb on + strand, within dbpAat 1408.018 kb on + strand, within dbpAat 1408.236 kb on + strand, within dbpAat 1408.267 kb on - strand, within dbpAat 1408.317 kb on + strand, within dbpAat 1408.317 kb on + strand, within dbpAat 1408.531 kb on - strand, within dbpAat 1408.598 kb on - strand, within dbpAat 1408.740 kb on - strand, within dbpAat 1408.740 kb on - strand, within dbpAat 1409.313 kb on + strand, within ydaOat 1409.443 kb on + strand, within ydaOat 1409.571 kb on + strand, within ydaOat 1409.591 kb on + strand, within ydaOat 1409.678 kb on - strand, within ydaO

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 Anaerobic Capecitabine 500 uM
remove
1,406,622 + ydaN b1342 0.56 +0.3
1,406,678 - ydaN b1342 0.61 -0.5
1,406,727 + ydaN b1342 0.66 -0.7
1,406,727 + ydaN b1342 0.66 -0.2
1,406,783 + ydaN b1342 0.72 -0.6
1,406,812 - ydaN b1342 0.75 -0.1
1,406,814 - ydaN b1342 0.75 -0.1
1,406,822 - ydaN b1342 0.76 -0.1
1,406,876 + ydaN b1342 0.82 -0.5
1,406,879 - ydaN b1342 0.82 +0.1
1,406,879 - ydaN b1342 0.82 -1.3
1,407,150 - +0.5
1,407,225 - fnrS b4699 0.59 +1.0
1,407,299 - +0.2
1,407,384 + +1.1
1,407,384 + -0.0
1,407,421 + -0.7
1,407,429 - +0.4
1,407,799 + dbpA b1343 0.19 +0.3
1,408,018 + dbpA b1343 0.35 +0.2
1,408,018 + dbpA b1343 0.35 +0.5
1,408,236 + dbpA b1343 0.51 +0.4
1,408,267 - dbpA b1343 0.53 +0.5
1,408,317 + dbpA b1343 0.57 +0.1
1,408,317 + dbpA b1343 0.57 +0.7
1,408,531 - dbpA b1343 0.72 -0.1
1,408,598 - dbpA b1343 0.77 +0.7
1,408,740 - dbpA b1343 0.88 +0.5
1,408,740 - dbpA b1343 0.88 -0.2
1,409,313 + ydaO b1344 0.29 -0.3
1,409,443 + ydaO b1344 0.43 +0.5
1,409,571 + ydaO b1344 0.57 +0.0
1,409,591 + ydaO b1344 0.59 -0.2
1,409,678 - ydaO b1344 0.68 +0.3

Or see this region's nucleotide sequence