Strain Fitness in Escherichia coli BW25113 around b0171

Experiment: M9 Anaerobic Capecitabine 5000 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttsf and pyrH are separated by 146 nucleotidespyrH and frr are separated by 291 nucleotidesfrr and dxr are separated by 91 nucleotides b0170: tsf - elongation factor Ts (NCBI), at 190,857 to 191,708 tsf b0171: pyrH - uridylate kinase (NCBI), at 191,855 to 192,580 pyrH b0172: frr - ribosome releasing factor (NCBI), at 192,872 to 193,429 frr b0173: dxr - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI), at 193,521 to 194,717 dxr Position (kb) 191 192 193Strain fitness (log2 ratio) -1 0 1 2at 191.829 kb on + strandat 191.829 kb on + strandat 192.628 kb on + strandat 192.628 kb on + strandat 192.700 kb on + strandat 192.720 kb on + strandat 192.728 kb on - strandat 192.728 kb on - strandat 192.730 kb on + strandat 192.736 kb on - strandat 192.802 kb on - strandat 192.802 kb on - strandat 192.805 kb on + strandat 192.815 kb on + strandat 192.815 kb on + strandat 192.815 kb on + strandat 192.823 kb on + strandat 192.823 kb on + strandat 192.838 kb on + strandat 192.842 kb on + strandat 193.455 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 Anaerobic Capecitabine 5000 uM
remove
191,829 + +2.1
191,829 + -0.7
192,628 + -0.2
192,628 + +0.7
192,700 + -1.2
192,720 + -0.0
192,728 - +2.6
192,728 - +2.6
192,730 + -0.5
192,736 - -0.3
192,802 - -0.2
192,802 - +0.5
192,805 + -0.5
192,815 + +0.5
192,815 + +0.2
192,815 + -0.0
192,823 + -0.3
192,823 + -0.1
192,838 + -0.4
192,842 + +0.8
193,455 + -0.5

Or see this region's nucleotide sequence