Strain Fitness in Pseudomonas putida KT2440 around PP_0792

Experiment: TNT (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0790 and PP_0791 are separated by 44 nucleotidesPP_0791 and PP_0792 are separated by 2 nucleotidesPP_0792 and PP_0793 are separated by 284 nucleotides PP_0790: PP_0790 - Inner membrane protein AmpE, at 906,559 to 907,389 _0790 PP_0791: PP_0791 - putative hydrolase, at 907,434 to 908,210 _0791 PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208 _0792 PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345 _0793 Position (kb) 908 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 907.554 kb on + strand, within PP_0791at 907.564 kb on + strand, within PP_0791at 907.705 kb on + strand, within PP_0791at 907.706 kb on - strand, within PP_0791at 907.724 kb on - strand, within PP_0791at 907.724 kb on - strand, within PP_0791at 907.724 kb on - strand, within PP_0791at 907.769 kb on - strand, within PP_0791at 907.769 kb on - strand, within PP_0791at 907.769 kb on - strand, within PP_0791at 907.904 kb on - strand, within PP_0791at 907.906 kb on + strand, within PP_0791at 907.907 kb on - strand, within PP_0791at 907.907 kb on - strand, within PP_0791at 907.907 kb on - strand, within PP_0791at 907.927 kb on - strand, within PP_0791at 907.927 kb on - strand, within PP_0791at 907.927 kb on - strand, within PP_0791at 907.935 kb on + strand, within PP_0791at 908.012 kb on - strand, within PP_0791at 908.092 kb on + strand, within PP_0791at 908.092 kb on + strand, within PP_0791at 908.092 kb on + strand, within PP_0791at 908.092 kb on + strand, within PP_0791at 908.093 kb on - strand, within PP_0791at 908.093 kb on - strand, within PP_0791at 908.271 kb on + strandat 908.272 kb on - strandat 908.272 kb on - strandat 908.466 kb on + strand, within PP_0792at 908.467 kb on - strand, within PP_0792at 908.467 kb on - strand, within PP_0792at 908.467 kb on - strand, within PP_0792at 908.467 kb on - strand, within PP_0792at 908.467 kb on - strand, within PP_0792at 908.566 kb on - strand, within PP_0792at 908.586 kb on + strand, within PP_0792at 908.586 kb on + strand, within PP_0792at 908.587 kb on - strand, within PP_0792at 908.809 kb on - strand, within PP_0792at 908.934 kb on + strand, within PP_0792at 908.982 kb on + strand, within PP_0792at 908.983 kb on - strand, within PP_0792at 908.983 kb on - strand, within PP_0792at 909.029 kb on - strand, within PP_0792at 909.109 kb on + strandat 909.153 kb on + strandat 909.153 kb on + strandat 909.153 kb on + strandat 909.224 kb on - strandat 909.224 kb on - strandat 909.224 kb on - strandat 909.256 kb on + strandat 909.256 kb on + strandat 909.345 kb on + strandat 909.435 kb on - strandat 909.435 kb on - strandat 909.435 kb on - strandat 909.453 kb on + strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.607 kb on + strandat 909.607 kb on + strandat 909.681 kb on + strandat 909.681 kb on + strandat 909.682 kb on - strandat 909.706 kb on + strandat 909.719 kb on + strandat 909.747 kb on - strandat 909.772 kb on + strandat 909.773 kb on - strandat 909.786 kb on + strand, within PP_0793at 909.786 kb on + strand, within PP_0793at 909.786 kb on + strand, within PP_0793at 909.787 kb on - strand, within PP_0793

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Per-strain Table

Position Strand Gene LocusTag Fraction TNT (N)
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907,554 + PP_0791 0.15 +0.5
907,564 + PP_0791 0.17 +0.4
907,705 + PP_0791 0.35 -0.7
907,706 - PP_0791 0.35 -0.8
907,724 - PP_0791 0.37 +0.5
907,724 - PP_0791 0.37 +0.4
907,724 - PP_0791 0.37 -0.5
907,769 - PP_0791 0.43 -1.2
907,769 - PP_0791 0.43 -0.2
907,769 - PP_0791 0.43 +0.0
907,904 - PP_0791 0.60 -0.1
907,906 + PP_0791 0.61 -0.9
907,907 - PP_0791 0.61 +0.0
907,907 - PP_0791 0.61 +1.0
907,907 - PP_0791 0.61 -1.0
907,927 - PP_0791 0.63 -0.2
907,927 - PP_0791 0.63 -0.9
907,927 - PP_0791 0.63 +0.8
907,935 + PP_0791 0.64 +0.1
908,012 - PP_0791 0.74 +0.7
908,092 + PP_0791 0.85 -1.4
908,092 + PP_0791 0.85 +0.7
908,092 + PP_0791 0.85 +0.6
908,092 + PP_0791 0.85 -0.7
908,093 - PP_0791 0.85 +0.3
908,093 - PP_0791 0.85 -0.0
908,271 + +0.5
908,272 - +0.0
908,272 - +0.0
908,466 + PP_0792 0.25 +0.8
908,467 - PP_0792 0.26 +0.6
908,467 - PP_0792 0.26 +0.2
908,467 - PP_0792 0.26 +0.0
908,467 - PP_0792 0.26 +0.5
908,467 - PP_0792 0.26 +0.8
908,566 - PP_0792 0.35 +1.4
908,586 + PP_0792 0.37 +0.6
908,586 + PP_0792 0.37 +0.8
908,587 - PP_0792 0.38 +1.2
908,809 - PP_0792 0.60 +0.1
908,934 + PP_0792 0.72 -0.1
908,982 + PP_0792 0.77 +1.8
908,983 - PP_0792 0.77 -0.7
908,983 - PP_0792 0.77 +1.9
909,029 - PP_0792 0.82 +1.0
909,109 + -0.4
909,153 + +0.0
909,153 + +1.3
909,153 + -0.1
909,224 - -0.6
909,224 - -1.5
909,224 - +0.1
909,256 + +0.4
909,256 + +0.4
909,345 + +1.4
909,435 - +1.3
909,435 - +0.7
909,435 - -1.1
909,453 + +0.2
909,454 - -1.2
909,454 - +0.1
909,454 - -1.1
909,454 - +0.4
909,607 + -0.5
909,607 + +0.3
909,681 + +0.2
909,681 + -0.7
909,682 - -0.5
909,706 + +3.0
909,719 + -2.3
909,747 - -1.2
909,772 + -3.5
909,773 - -0.5
909,786 + PP_0793 0.10 -1.4
909,786 + PP_0793 0.10 -2.2
909,786 + PP_0793 0.10 -0.5
909,787 - PP_0793 0.10 -2.4

Or see this region's nucleotide sequence