Strain Fitness in Pseudomonas putida KT2440 around PP_0039

Experiment: TNT (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0037 and PP_0039 are separated by 298 nucleotidesPP_0039 and PP_0040 are separated by 127 nucleotidesPP_0040 and PP_0041 are separated by 92 nucleotides PP_0037: PP_0037 - porin P, at 40,469 to 41,758 _0037 PP_0039: PP_0039 - hypothetical protein, at 42,057 to 43,082 _0039 PP_0040: PP_0040 - hypothetical protein, at 43,210 to 43,434 _0040 PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524 _0041 Position (kb) 42 43 44Strain fitness (log2 ratio) -2 -1 0 1 2 3at 41.075 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.082 kb on + strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.083 kb on - strand, within PP_0037at 41.141 kb on + strand, within PP_0037at 41.141 kb on + strand, within PP_0037at 41.142 kb on - strand, within PP_0037at 41.212 kb on - strand, within PP_0037at 41.212 kb on - strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.215 kb on + strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.216 kb on - strand, within PP_0037at 41.360 kb on + strand, within PP_0037at 41.360 kb on + strand, within PP_0037at 41.360 kb on + strand, within PP_0037at 41.361 kb on - strand, within PP_0037at 41.361 kb on - strand, within PP_0037at 41.418 kb on - strand, within PP_0037at 41.420 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.435 kb on + strand, within PP_0037at 41.459 kb on - strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.462 kb on + strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.463 kb on - strand, within PP_0037at 41.491 kb on + strand, within PP_0037at 41.492 kb on - strand, within PP_0037at 41.534 kb on + strand, within PP_0037at 41.549 kb on - strand, within PP_0037at 41.549 kb on - strand, within PP_0037at 41.636 kb on + strandat 41.636 kb on + strandat 41.637 kb on - strandat 41.637 kb on - strandat 41.637 kb on - strandat 41.669 kb on + strandat 41.669 kb on + strandat 41.669 kb on + strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.670 kb on - strandat 41.747 kb on + strandat 41.747 kb on + strandat 41.747 kb on + strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.748 kb on - strandat 41.856 kb on + strandat 41.856 kb on + strandat 41.856 kb on + strandat 41.857 kb on - strandat 41.966 kb on + strandat 41.967 kb on - strandat 42.015 kb on + strandat 42.016 kb on - strandat 42.016 kb on - strandat 42.052 kb on + strandat 42.052 kb on + strandat 42.052 kb on + strandat 42.053 kb on - strandat 42.053 kb on - strandat 42.246 kb on + strand, within PP_0039at 42.246 kb on + strand, within PP_0039at 42.246 kb on + strand, within PP_0039at 42.246 kb on + strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.247 kb on - strand, within PP_0039at 42.255 kb on + strand, within PP_0039at 42.256 kb on - strand, within PP_0039at 42.286 kb on + strand, within PP_0039at 42.287 kb on - strand, within PP_0039at 42.287 kb on - strand, within PP_0039at 42.340 kb on + strand, within PP_0039at 42.341 kb on - strand, within PP_0039at 42.457 kb on + strand, within PP_0039at 42.457 kb on + strand, within PP_0039at 42.458 kb on - strand, within PP_0039at 42.458 kb on - strand, within PP_0039at 42.507 kb on - strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.615 kb on + strand, within PP_0039at 42.616 kb on - strand, within PP_0039at 42.625 kb on + strand, within PP_0039at 42.757 kb on - strand, within PP_0039at 42.795 kb on + strand, within PP_0039at 42.795 kb on + strand, within PP_0039at 42.795 kb on + strand, within PP_0039at 42.932 kb on + strand, within PP_0039at 42.933 kb on - strand, within PP_0039at 42.951 kb on + strand, within PP_0039at 42.951 kb on + strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.952 kb on - strand, within PP_0039at 42.999 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.009 kb on + strandat 43.010 kb on - strandat 43.076 kb on + strandat 43.076 kb on + strandat 43.076 kb on + strandat 43.077 kb on - strandat 43.077 kb on - strandat 43.126 kb on + strandat 43.127 kb on - strandat 43.127 kb on - strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.209 kb on + strandat 43.209 kb on + strandat 43.210 kb on - strandat 43.210 kb on - strandat 43.273 kb on + strand, within PP_0040at 43.273 kb on + strand, within PP_0040at 43.274 kb on - strand, within PP_0040at 43.274 kb on - strand, within PP_0040at 43.368 kb on - strand, within PP_0040at 43.444 kb on - strandat 43.474 kb on + strandat 43.474 kb on + strandat 43.474 kb on + strandat 43.480 kb on + strandat 43.480 kb on + strandat 43.481 kb on - strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.502 kb on + strandat 43.503 kb on - strandat 43.503 kb on - strandat 43.503 kb on - strandat 43.503 kb on - strandat 43.543 kb on + strandat 43.751 kb on + strand, within PP_0041at 43.751 kb on + strand, within PP_0041at 43.941 kb on + strand, within PP_0041at 43.941 kb on + strand, within PP_0041at 43.941 kb on + strand, within PP_0041at 43.942 kb on - strand, within PP_0041at 43.942 kb on - strand, within PP_0041at 43.942 kb on - strand, within PP_0041at 43.960 kb on - strand, within PP_0041at 43.960 kb on - strand, within PP_0041at 44.024 kb on + strand, within PP_0041at 44.024 kb on + strand, within PP_0041at 44.024 kb on + strand, within PP_0041at 44.025 kb on - strand, within PP_0041at 44.025 kb on - strand, within PP_0041at 44.025 kb on - strand, within PP_0041at 44.070 kb on + strand, within PP_0041

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Per-strain Table

Position Strand Gene LocusTag Fraction TNT (N)
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41,075 + PP_0037 0.47 +0.0
41,082 + PP_0037 0.48 +0.3
41,082 + PP_0037 0.48 +0.0
41,082 + PP_0037 0.48 +1.0
41,082 + PP_0037 0.48 +0.4
41,082 + PP_0037 0.48 +0.6
41,082 + PP_0037 0.48 -0.6
41,082 + PP_0037 0.48 +0.6
41,082 + PP_0037 0.48 +0.3
41,083 - PP_0037 0.48 -0.7
41,083 - PP_0037 0.48 -0.4
41,083 - PP_0037 0.48 -0.4
41,083 - PP_0037 0.48 +1.6
41,141 + PP_0037 0.52 -2.3
41,141 + PP_0037 0.52 -1.3
41,142 - PP_0037 0.52 -1.7
41,212 - PP_0037 0.58 -0.8
41,212 - PP_0037 0.58 -0.3
41,215 + PP_0037 0.58 -0.4
41,215 + PP_0037 0.58 -0.1
41,215 + PP_0037 0.58 +0.6
41,216 - PP_0037 0.58 -0.6
41,216 - PP_0037 0.58 +1.8
41,216 - PP_0037 0.58 +0.3
41,216 - PP_0037 0.58 +1.4
41,360 + PP_0037 0.69 +0.4
41,360 + PP_0037 0.69 +0.5
41,360 + PP_0037 0.69 +0.9
41,361 - PP_0037 0.69 -0.8
41,361 - PP_0037 0.69 -0.7
41,418 - PP_0037 0.74 -1.2
41,420 + PP_0037 0.74 +0.4
41,435 + PP_0037 0.75 -0.3
41,435 + PP_0037 0.75 -0.6
41,435 + PP_0037 0.75 +0.9
41,435 + PP_0037 0.75 +0.2
41,435 + PP_0037 0.75 -0.4
41,459 - PP_0037 0.77 -0.0
41,462 + PP_0037 0.77 +0.4
41,462 + PP_0037 0.77 +1.6
41,462 + PP_0037 0.77 +0.5
41,462 + PP_0037 0.77 +0.0
41,463 - PP_0037 0.77 -0.3
41,463 - PP_0037 0.77 +0.3
41,463 - PP_0037 0.77 +0.3
41,463 - PP_0037 0.77 -0.5
41,491 + PP_0037 0.79 -1.3
41,492 - PP_0037 0.79 -0.8
41,534 + PP_0037 0.83 -1.7
41,549 - PP_0037 0.84 -0.4
41,549 - PP_0037 0.84 +0.5
41,636 + +0.5
41,636 + +1.9
41,637 - -1.1
41,637 - +0.2
41,637 - -1.6
41,669 + -0.5
41,669 + -0.4
41,669 + +0.4
41,670 - -0.2
41,670 - -1.2
41,670 - -0.1
41,670 - +1.2
41,670 - +0.2
41,670 - -0.3
41,747 + +0.3
41,747 + +1.2
41,747 + -1.6
41,748 - +1.1
41,748 - -1.2
41,748 - +1.0
41,748 - -0.1
41,748 - +0.2
41,856 + +0.2
41,856 + +0.9
41,856 + +1.7
41,857 - -0.9
41,966 + +0.2
41,967 - +0.8
42,015 + +0.2
42,016 - +1.1
42,016 - -0.6
42,052 + -0.2
42,052 + -1.5
42,052 + -0.6
42,053 - -0.3
42,053 - -0.9
42,246 + PP_0039 0.18 +1.4
42,246 + PP_0039 0.18 -0.5
42,246 + PP_0039 0.18 -1.0
42,246 + PP_0039 0.18 -0.2
42,247 - PP_0039 0.19 -0.6
42,247 - PP_0039 0.19 -0.5
42,247 - PP_0039 0.19 -0.5
42,247 - PP_0039 0.19 -0.3
42,247 - PP_0039 0.19 +0.2
42,247 - PP_0039 0.19 -0.8
42,255 + PP_0039 0.19 -1.5
42,256 - PP_0039 0.19 -0.4
42,286 + PP_0039 0.22 -1.0
42,287 - PP_0039 0.22 -0.1
42,287 - PP_0039 0.22 +0.7
42,340 + PP_0039 0.28 -0.7
42,341 - PP_0039 0.28 +0.1
42,457 + PP_0039 0.39 -0.6
42,457 + PP_0039 0.39 -0.6
42,458 - PP_0039 0.39 -0.9
42,458 - PP_0039 0.39 -0.8
42,507 - PP_0039 0.44 +3.2
42,615 + PP_0039 0.54 -0.3
42,615 + PP_0039 0.54 -0.6
42,615 + PP_0039 0.54 +0.3
42,616 - PP_0039 0.54 -0.5
42,625 + PP_0039 0.55 +0.1
42,757 - PP_0039 0.68 -0.0
42,795 + PP_0039 0.72 -0.5
42,795 + PP_0039 0.72 +0.6
42,795 + PP_0039 0.72 -0.9
42,932 + PP_0039 0.85 +1.4
42,933 - PP_0039 0.85 -0.4
42,951 + PP_0039 0.87 -0.4
42,951 + PP_0039 0.87 -1.0
42,952 - PP_0039 0.87 -0.6
42,952 - PP_0039 0.87 -0.8
42,952 - PP_0039 0.87 -0.6
42,952 - PP_0039 0.87 -0.5
42,999 + +1.1
43,009 + +1.3
43,009 + -0.5
43,009 + -0.7
43,009 + -0.2
43,009 + +0.5
43,010 - +0.3
43,076 + +0.8
43,076 + +0.6
43,076 + -0.8
43,077 - +0.0
43,077 - +0.2
43,126 + +0.1
43,127 - +0.1
43,127 - -0.5
43,205 + +0.5
43,205 + -0.7
43,206 - -0.1
43,206 - -0.5
43,206 - -0.1
43,206 - +0.1
43,206 - -1.1
43,206 - -0.4
43,209 + -0.5
43,209 + +0.4
43,210 - +0.9
43,210 - +0.0
43,273 + PP_0040 0.28 -1.0
43,273 + PP_0040 0.28 +0.6
43,274 - PP_0040 0.28 +0.6
43,274 - PP_0040 0.28 -0.8
43,368 - PP_0040 0.70 +0.2
43,444 - +0.2
43,474 + -0.3
43,474 + +1.1
43,474 + -0.1
43,480 + -0.8
43,480 + +0.6
43,481 - -1.5
43,502 + -0.5
43,502 + -1.9
43,502 + +0.1
43,502 + -0.2
43,502 + -0.9
43,502 + +0.0
43,503 - -0.2
43,503 - +1.6
43,503 - -0.2
43,503 - +0.6
43,543 + -1.0
43,751 + PP_0041 0.11 +0.4
43,751 + PP_0041 0.11 -0.6
43,941 + PP_0041 0.21 -0.5
43,941 + PP_0041 0.21 +0.0
43,941 + PP_0041 0.21 +0.2
43,942 - PP_0041 0.21 -1.4
43,942 - PP_0041 0.21 +0.6
43,942 - PP_0041 0.21 -0.6
43,960 - PP_0041 0.22 -0.1
43,960 - PP_0041 0.22 -0.3
44,024 + PP_0041 0.25 -0.0
44,024 + PP_0041 0.25 +0.0
44,024 + PP_0041 0.25 -0.6
44,025 - PP_0041 0.25 +0.1
44,025 - PP_0041 0.25 -0.3
44,025 - PP_0041 0.25 -0.4
44,070 + PP_0041 0.27 +0.1

Or see this region's nucleotide sequence