Experiment: Ammonium chloride and TNT (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0348 and PP_5443 are separated by 67 nucleotides PP_5443 and PP_0349 overlap by 4 nucleotides
PP_0348: PP_0348 - conserved protein of unknown function, at 421,161 to 423,947
_0348
PP_5443: PP_5443 - conserved protein of unknown function, at 424,015 to 424,200
_5443
PP_0349: PP_0349 - putative Membrane protein, at 424,197 to 425,309
_0349
Position (kb) 424
425 Strain fitness (log2 ratio) -2
-1
0
1
2 at 423.078 kb on - strand, within PP_0348 at 423.078 kb on - strand, within PP_0348 at 423.078 kb on - strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.101 kb on + strand, within PP_0348 at 423.102 kb on - strand, within PP_0348 at 423.102 kb on - strand, within PP_0348 at 423.102 kb on - strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.200 kb on + strand, within PP_0348 at 423.201 kb on - strand, within PP_0348 at 423.201 kb on - strand, within PP_0348 at 423.201 kb on - strand, within PP_0348 at 423.204 kb on + strand, within PP_0348 at 423.205 kb on - strand, within PP_0348 at 423.205 kb on - strand, within PP_0348 at 423.276 kb on + strand, within PP_0348 at 423.277 kb on - strand, within PP_0348 at 423.277 kb on - strand, within PP_0348 at 423.277 kb on - strand, within PP_0348 at 423.325 kb on + strand, within PP_0348 at 423.326 kb on - strand, within PP_0348 at 423.326 kb on - strand, within PP_0348 at 423.373 kb on + strand, within PP_0348 at 423.373 kb on + strand, within PP_0348 at 423.568 kb on + strand, within PP_0348 at 423.569 kb on - strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.638 kb on + strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.639 kb on - strand, within PP_0348 at 423.681 kb on + strand at 423.681 kb on + strand at 423.681 kb on + strand at 423.681 kb on + strand at 423.682 kb on - strand at 423.988 kb on + strand at 423.989 kb on - strand at 424.244 kb on - strand at 424.244 kb on - strand at 424.319 kb on - strand, within PP_0349 at 424.363 kb on + strand, within PP_0349 at 424.416 kb on + strand, within PP_0349 at 424.417 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.472 kb on - strand, within PP_0349 at 424.674 kb on + strand, within PP_0349 at 424.774 kb on - strand, within PP_0349 at 424.810 kb on + strand, within PP_0349 at 424.810 kb on + strand, within PP_0349 at 424.811 kb on - strand, within PP_0349 at 424.848 kb on + strand, within PP_0349 at 424.848 kb on + strand, within PP_0349 at 424.849 kb on - strand, within PP_0349 at 424.849 kb on - strand, within PP_0349 at 425.179 kb on - strand, within PP_0349
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride and TNT (N) remove 423,078 - PP_0348 0.69 -0.2 423,078 - PP_0348 0.69 -1.1 423,078 - PP_0348 0.69 -0.9 423,101 + PP_0348 0.70 -0.3 423,101 + PP_0348 0.70 +1.9 423,101 + PP_0348 0.70 +0.2 423,101 + PP_0348 0.70 -0.1 423,102 - PP_0348 0.70 +1.7 423,102 - PP_0348 0.70 -0.2 423,102 - PP_0348 0.70 -0.2 423,200 + PP_0348 0.73 +0.7 423,200 + PP_0348 0.73 +0.1 423,200 + PP_0348 0.73 +0.4 423,200 + PP_0348 0.73 +0.2 423,200 + PP_0348 0.73 +0.4 423,201 - PP_0348 0.73 +1.0 423,201 - PP_0348 0.73 -1.4 423,201 - PP_0348 0.73 -0.8 423,204 + PP_0348 0.73 +0.9 423,205 - PP_0348 0.73 +1.1 423,205 - PP_0348 0.73 +0.3 423,276 + PP_0348 0.76 -1.1 423,277 - PP_0348 0.76 -0.9 423,277 - PP_0348 0.76 +0.2 423,277 - PP_0348 0.76 +0.4 423,325 + PP_0348 0.78 -1.7 423,326 - PP_0348 0.78 -0.2 423,326 - PP_0348 0.78 -0.4 423,373 + PP_0348 0.79 +0.3 423,373 + PP_0348 0.79 +1.6 423,568 + PP_0348 0.86 +0.1 423,569 - PP_0348 0.86 -0.2 423,638 + PP_0348 0.89 -0.4 423,638 + PP_0348 0.89 +0.2 423,638 + PP_0348 0.89 +0.4 423,638 + PP_0348 0.89 -0.6 423,639 - PP_0348 0.89 +0.1 423,639 - PP_0348 0.89 -1.2 423,639 - PP_0348 0.89 +0.1 423,639 - PP_0348 0.89 -1.2 423,639 - PP_0348 0.89 -0.5 423,681 + +1.7 423,681 + -2.5 423,681 + +1.3 423,681 + -1.7 423,682 - +0.8 423,988 + -1.1 423,989 - -0.4 424,244 - +0.7 424,244 - +1.7 424,319 - PP_0349 0.11 -0.9 424,363 + PP_0349 0.15 -1.0 424,416 + PP_0349 0.20 -0.1 424,417 - PP_0349 0.20 +0.9 424,472 - PP_0349 0.25 +0.4 424,472 - PP_0349 0.25 +1.1 424,472 - PP_0349 0.25 -1.3 424,674 + PP_0349 0.43 -0.2 424,774 - PP_0349 0.52 -0.1 424,810 + PP_0349 0.55 +0.2 424,810 + PP_0349 0.55 -0.6 424,811 - PP_0349 0.55 -0.4 424,848 + PP_0349 0.58 +0.3 424,848 + PP_0349 0.58 +0.2 424,849 - PP_0349 0.59 +0.4 424,849 - PP_0349 0.59 -0.5 425,179 - PP_0349 0.88 +0.2
Or see this region's nucleotide sequence