Strain Fitness in Pseudomonas putida KT2440 around PP_4838

Experiment: Ammonium chloride and TNT (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4836 and PP_4837 are separated by 22 nucleotidesPP_4837 and PP_4838 are separated by 66 nucleotidesPP_4838 and PP_4839 are separated by 56 nucleotides PP_4836: PP_4836 - conserved exported protein of unknown function, at 5,502,045 to 5,502,530 _4836 PP_4837: PP_4837 - conserved protein of unknown function, at 5,502,553 to 5,502,984 _4837 PP_4838: PP_4838 - Outer membrane copper receptor OprC, at 5,503,051 to 5,505,117 _4838 PP_4839: PP_4839 - putative iron-regulated membrane protein, at 5,505,174 to 5,506,541 _4839 Position (kb) 5503 5504 5505 5506Strain fitness (log2 ratio) -1 0 1 2at 5502.111 kb on + strand, within PP_4836at 5502.112 kb on - strand, within PP_4836at 5502.186 kb on + strand, within PP_4836at 5502.193 kb on - strand, within PP_4836at 5502.366 kb on + strand, within PP_4836at 5502.367 kb on - strand, within PP_4836at 5502.478 kb on + strand, within PP_4836at 5502.531 kb on + strandat 5502.531 kb on + strandat 5502.532 kb on - strandat 5502.583 kb on - strandat 5502.665 kb on + strand, within PP_4837at 5502.935 kb on + strand, within PP_4837at 5502.935 kb on + strand, within PP_4837at 5502.936 kb on - strand, within PP_4837at 5502.936 kb on - strand, within PP_4837at 5503.050 kb on + strandat 5503.051 kb on - strandat 5503.444 kb on + strand, within PP_4838at 5503.444 kb on + strand, within PP_4838at 5503.444 kb on + strand, within PP_4838at 5503.444 kb on + strand, within PP_4838at 5503.444 kb on + strand, within PP_4838at 5503.445 kb on - strand, within PP_4838at 5503.445 kb on - strand, within PP_4838at 5503.445 kb on - strand, within PP_4838at 5503.445 kb on - strand, within PP_4838at 5503.445 kb on - strand, within PP_4838at 5503.447 kb on - strand, within PP_4838at 5503.447 kb on - strand, within PP_4838at 5503.463 kb on - strand, within PP_4838at 5503.463 kb on - strand, within PP_4838at 5503.463 kb on - strand, within PP_4838at 5503.657 kb on + strand, within PP_4838at 5503.657 kb on + strand, within PP_4838at 5503.936 kb on + strand, within PP_4838at 5503.936 kb on + strand, within PP_4838at 5503.937 kb on - strand, within PP_4838at 5503.939 kb on + strand, within PP_4838at 5503.939 kb on + strand, within PP_4838at 5503.939 kb on + strand, within PP_4838at 5503.939 kb on + strand, within PP_4838at 5503.939 kb on + strand, within PP_4838at 5503.940 kb on - strand, within PP_4838at 5503.940 kb on - strand, within PP_4838at 5503.945 kb on + strand, within PP_4838at 5503.945 kb on + strand, within PP_4838at 5503.946 kb on - strand, within PP_4838at 5503.946 kb on - strand, within PP_4838at 5503.969 kb on + strand, within PP_4838at 5503.969 kb on + strand, within PP_4838at 5503.969 kb on + strand, within PP_4838at 5503.969 kb on + strand, within PP_4838at 5503.969 kb on + strand, within PP_4838at 5503.970 kb on - strand, within PP_4838at 5503.970 kb on - strand, within PP_4838at 5503.970 kb on - strand, within PP_4838at 5503.970 kb on - strand, within PP_4838at 5504.194 kb on + strand, within PP_4838at 5504.194 kb on + strand, within PP_4838at 5504.221 kb on + strand, within PP_4838at 5504.221 kb on + strand, within PP_4838at 5504.221 kb on + strand, within PP_4838at 5504.222 kb on - strand, within PP_4838at 5504.386 kb on + strand, within PP_4838at 5504.386 kb on + strand, within PP_4838at 5504.387 kb on - strand, within PP_4838at 5504.387 kb on - strand, within PP_4838at 5504.387 kb on - strand, within PP_4838at 5504.387 kb on - strand, within PP_4838at 5504.423 kb on - strand, within PP_4838at 5504.561 kb on - strand, within PP_4838at 5504.561 kb on - strand, within PP_4838at 5504.561 kb on - strand, within PP_4838at 5504.581 kb on + strand, within PP_4838at 5504.581 kb on + strand, within PP_4838at 5504.582 kb on - strand, within PP_4838at 5504.596 kb on + strand, within PP_4838at 5504.596 kb on + strand, within PP_4838at 5504.680 kb on + strand, within PP_4838at 5504.722 kb on + strand, within PP_4838at 5504.722 kb on + strand, within PP_4838at 5504.759 kb on + strand, within PP_4838at 5504.800 kb on + strand, within PP_4838at 5504.801 kb on - strand, within PP_4838at 5504.801 kb on - strand, within PP_4838at 5504.896 kb on + strand, within PP_4838at 5504.897 kb on - strand, within PP_4838at 5504.897 kb on - strand, within PP_4838at 5504.941 kb on + strandat 5504.941 kb on + strandat 5504.941 kb on + strandat 5504.941 kb on + strandat 5505.199 kb on - strandat 5505.199 kb on - strandat 5505.200 kb on + strandat 5505.226 kb on - strandat 5505.282 kb on + strandat 5505.282 kb on + strandat 5505.282 kb on + strandat 5505.282 kb on + strandat 5505.283 kb on - strandat 5505.283 kb on - strandat 5505.417 kb on + strand, within PP_4839at 5505.417 kb on + strand, within PP_4839at 5505.501 kb on + strand, within PP_4839at 5505.501 kb on + strand, within PP_4839at 5505.502 kb on - strand, within PP_4839at 5505.654 kb on + strand, within PP_4839at 5505.654 kb on + strand, within PP_4839at 5505.654 kb on + strand, within PP_4839at 5505.654 kb on + strand, within PP_4839at 5505.655 kb on - strand, within PP_4839at 5505.655 kb on - strand, within PP_4839at 5505.828 kb on + strand, within PP_4839at 5505.829 kb on - strand, within PP_4839at 5505.829 kb on - strand, within PP_4839at 5506.080 kb on + strand, within PP_4839at 5506.081 kb on - strand, within PP_4839

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride and TNT (N)
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5,502,111 + PP_4836 0.14 +0.4
5,502,112 - PP_4836 0.14 +0.8
5,502,186 + PP_4836 0.29 +0.1
5,502,193 - PP_4836 0.30 -0.6
5,502,366 + PP_4836 0.66 -1.6
5,502,367 - PP_4836 0.66 +0.1
5,502,478 + PP_4836 0.89 -0.0
5,502,531 + -0.9
5,502,531 + -0.4
5,502,532 - -1.1
5,502,583 - +0.9
5,502,665 + PP_4837 0.26 -0.6
5,502,935 + PP_4837 0.88 +1.1
5,502,935 + PP_4837 0.88 +0.2
5,502,936 - PP_4837 0.89 +0.2
5,502,936 - PP_4837 0.89 +1.2
5,503,050 + +0.5
5,503,051 - -0.4
5,503,444 + PP_4838 0.19 +0.2
5,503,444 + PP_4838 0.19 +0.1
5,503,444 + PP_4838 0.19 +0.4
5,503,444 + PP_4838 0.19 +1.8
5,503,444 + PP_4838 0.19 +0.6
5,503,445 - PP_4838 0.19 +2.4
5,503,445 - PP_4838 0.19 +0.5
5,503,445 - PP_4838 0.19 -1.3
5,503,445 - PP_4838 0.19 +2.2
5,503,445 - PP_4838 0.19 -0.0
5,503,447 - PP_4838 0.19 -0.4
5,503,447 - PP_4838 0.19 +2.6
5,503,463 - PP_4838 0.20 -0.1
5,503,463 - PP_4838 0.20 +0.1
5,503,463 - PP_4838 0.20 +1.3
5,503,657 + PP_4838 0.29 +1.6
5,503,657 + PP_4838 0.29 -0.4
5,503,936 + PP_4838 0.43 +0.2
5,503,936 + PP_4838 0.43 +2.3
5,503,937 - PP_4838 0.43 +0.2
5,503,939 + PP_4838 0.43 +0.1
5,503,939 + PP_4838 0.43 +1.0
5,503,939 + PP_4838 0.43 +1.3
5,503,939 + PP_4838 0.43 +0.4
5,503,939 + PP_4838 0.43 +0.3
5,503,940 - PP_4838 0.43 +0.2
5,503,940 - PP_4838 0.43 +1.8
5,503,945 + PP_4838 0.43 +1.2
5,503,945 + PP_4838 0.43 -0.7
5,503,946 - PP_4838 0.43 +0.4
5,503,946 - PP_4838 0.43 -0.4
5,503,969 + PP_4838 0.44 +0.5
5,503,969 + PP_4838 0.44 +0.7
5,503,969 + PP_4838 0.44 +0.6
5,503,969 + PP_4838 0.44 +0.0
5,503,969 + PP_4838 0.44 +0.5
5,503,970 - PP_4838 0.44 +0.6
5,503,970 - PP_4838 0.44 +0.9
5,503,970 - PP_4838 0.44 +0.5
5,503,970 - PP_4838 0.44 +1.8
5,504,194 + PP_4838 0.55 +0.8
5,504,194 + PP_4838 0.55 -0.0
5,504,221 + PP_4838 0.57 +0.5
5,504,221 + PP_4838 0.57 +1.8
5,504,221 + PP_4838 0.57 +0.5
5,504,222 - PP_4838 0.57 +0.3
5,504,386 + PP_4838 0.65 +1.7
5,504,386 + PP_4838 0.65 +1.4
5,504,387 - PP_4838 0.65 -0.1
5,504,387 - PP_4838 0.65 +0.4
5,504,387 - PP_4838 0.65 +0.5
5,504,387 - PP_4838 0.65 +1.4
5,504,423 - PP_4838 0.66 +1.1
5,504,561 - PP_4838 0.73 +0.4
5,504,561 - PP_4838 0.73 -1.7
5,504,561 - PP_4838 0.73 +1.3
5,504,581 + PP_4838 0.74 +0.5
5,504,581 + PP_4838 0.74 +0.4
5,504,582 - PP_4838 0.74 +1.6
5,504,596 + PP_4838 0.75 +0.6
5,504,596 + PP_4838 0.75 +0.8
5,504,680 + PP_4838 0.79 -0.8
5,504,722 + PP_4838 0.81 +0.9
5,504,722 + PP_4838 0.81 -0.0
5,504,759 + PP_4838 0.83 -0.7
5,504,800 + PP_4838 0.85 +0.8
5,504,801 - PP_4838 0.85 +0.1
5,504,801 - PP_4838 0.85 +0.3
5,504,896 + PP_4838 0.89 -0.3
5,504,897 - PP_4838 0.89 +0.6
5,504,897 - PP_4838 0.89 -0.2
5,504,941 + -0.0
5,504,941 + +1.6
5,504,941 + -0.9
5,504,941 + +1.1
5,505,199 - +0.4
5,505,199 - +1.3
5,505,200 + +2.6
5,505,226 - +0.4
5,505,282 + -0.3
5,505,282 + +0.2
5,505,282 + +0.6
5,505,282 + +0.0
5,505,283 - +0.1
5,505,283 - +1.5
5,505,417 + PP_4839 0.18 +0.1
5,505,417 + PP_4839 0.18 -0.2
5,505,501 + PP_4839 0.24 +0.0
5,505,501 + PP_4839 0.24 -0.5
5,505,502 - PP_4839 0.24 +0.8
5,505,654 + PP_4839 0.35 +0.2
5,505,654 + PP_4839 0.35 -0.2
5,505,654 + PP_4839 0.35 -0.4
5,505,654 + PP_4839 0.35 -1.0
5,505,655 - PP_4839 0.35 -0.8
5,505,655 - PP_4839 0.35 +0.4
5,505,828 + PP_4839 0.48 +0.3
5,505,829 - PP_4839 0.48 +0.2
5,505,829 - PP_4839 0.48 -0.9
5,506,080 + PP_4839 0.66 +0.2
5,506,081 - PP_4839 0.66 -0.1

Or see this region's nucleotide sequence