Strain Fitness in Pseudomonas putida KT2440 around PP_0793

Experiment: Ammonium chloride and TNT (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0792 and PP_0793 are separated by 284 nucleotidesPP_0793 and PP_0794 are separated by 0 nucleotidesPP_0794 and PP_0795 overlap by 4 nucleotides PP_0792: PP_0792 - catabolite repressor-activator, DNA-binding transcriptional dual regulator, at 908,213 to 909,208 _0792 PP_0793: PP_0793 - Phosphotransferase system, fructose-specific EI/HPr/EIIA components, at 909,493 to 912,345 _0793 PP_0794: PP_0794 - 1-phosphofructokinase monomer, at 912,346 to 913,293 _0794 PP_0795: PP_0795 - fructose PTS permease - IIBC component, at 913,290 to 915,032 _0795 Position (kb) 909 910 911 912 913Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 908.566 kb on - strand, within PP_0792at 908.586 kb on + strand, within PP_0792at 908.586 kb on + strand, within PP_0792at 908.587 kb on - strand, within PP_0792at 908.809 kb on - strand, within PP_0792at 908.934 kb on + strand, within PP_0792at 908.982 kb on + strand, within PP_0792at 908.983 kb on - strand, within PP_0792at 908.983 kb on - strand, within PP_0792at 909.029 kb on - strand, within PP_0792at 909.109 kb on + strandat 909.153 kb on + strandat 909.153 kb on + strandat 909.153 kb on + strandat 909.224 kb on - strandat 909.224 kb on - strandat 909.224 kb on - strandat 909.256 kb on + strandat 909.256 kb on + strandat 909.345 kb on + strandat 909.435 kb on - strandat 909.435 kb on - strandat 909.435 kb on - strandat 909.453 kb on + strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.454 kb on - strandat 909.607 kb on + strandat 909.607 kb on + strandat 909.681 kb on + strandat 909.681 kb on + strandat 909.682 kb on - strandat 909.706 kb on + strandat 909.719 kb on + strandat 909.747 kb on - strandat 909.772 kb on + strandat 909.773 kb on - strandat 909.786 kb on + strand, within PP_0793at 909.786 kb on + strand, within PP_0793at 909.786 kb on + strand, within PP_0793at 909.787 kb on - strand, within PP_0793at 910.661 kb on + strand, within PP_0793at 910.662 kb on - strand, within PP_0793at 910.662 kb on - strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.122 kb on + strandat 911.122 kb on + strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.122 kb on + strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.123 kb on - strand, within PP_0793at 911.252 kb on + strand, within PP_0793at 911.252 kb on + strand, within PP_0793at 911.282 kb on + strand, within PP_0793at 911.282 kb on + strand, within PP_0793at 911.282 kb on + strand, within PP_0793at 911.301 kb on + strand, within PP_0793at 911.302 kb on - strand, within PP_0793at 911.487 kb on + strand, within PP_0793at 911.686 kb on + strand, within PP_0793at 911.687 kb on - strand, within PP_0793at 911.687 kb on - strand, within PP_0793at 911.817 kb on + strand, within PP_0793at 911.817 kb on + strand, within PP_0793at 911.922 kb on + strand, within PP_0793at 912.013 kb on + strand, within PP_0793at 912.014 kb on - strand, within PP_0793at 912.081 kb on - strandat 912.387 kb on + strandat 912.510 kb on - strand, within PP_0794at 912.621 kb on + strand, within PP_0794at 912.622 kb on - strand, within PP_0794at 912.622 kb on - strand, within PP_0794at 912.833 kb on + strand, within PP_0794at 912.833 kb on + strand, within PP_0794at 912.834 kb on - strand, within PP_0794at 912.904 kb on - strand, within PP_0794at 913.304 kb on - strandat 913.304 kb on - strandat 913.339 kb on + strandat 913.340 kb on - strandat 913.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride and TNT (N)
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908,566 - PP_0792 0.35 +0.9
908,586 + PP_0792 0.37 +0.6
908,586 + PP_0792 0.37 +0.2
908,587 - PP_0792 0.38 +0.9
908,809 - PP_0792 0.60 -0.2
908,934 + PP_0792 0.72 +0.0
908,982 + PP_0792 0.77 +1.6
908,983 - PP_0792 0.77 +0.7
908,983 - PP_0792 0.77 -0.4
909,029 - PP_0792 0.82 +0.6
909,109 + +0.5
909,153 + +0.3
909,153 + +1.3
909,153 + -0.3
909,224 - -1.0
909,224 - -0.9
909,224 - -2.3
909,256 + +0.6
909,256 + +0.1
909,345 + +0.2
909,435 - +2.1
909,435 - +0.2
909,435 - -3.4
909,453 + +0.9
909,454 - -3.5
909,454 - -0.2
909,454 - -0.4
909,454 - -0.1
909,607 + -0.8
909,607 + -2.0
909,681 + -3.0
909,681 + -1.8
909,682 - +0.8
909,706 + +0.2
909,719 + -2.6
909,747 - -0.8
909,772 + -3.8
909,773 - -1.7
909,786 + PP_0793 0.10 -3.7
909,786 + PP_0793 0.10 -1.7
909,786 + PP_0793 0.10 -0.8
909,787 - PP_0793 0.10 -5.5
910,661 + PP_0793 0.41 -2.2
910,662 - PP_0793 0.41 -0.8
910,662 - PP_0793 0.41 -2.4
911,122 + PP_0793 0.57 +0.8
911,122 + PP_0793 0.57 +0.2
911,122 + +0.2
911,122 + PP_0793 0.57 -1.8
911,122 + PP_0793 0.57 -0.2
911,122 + PP_0793 0.57 -2.5
911,123 - PP_0793 0.57 -2.0
911,123 - PP_0793 0.57 -1.6
911,123 - PP_0793 0.57 -2.4
911,123 - PP_0793 0.57 -0.0
911,123 - PP_0793 0.57 -2.2
911,252 + PP_0793 0.62 -0.8
911,252 + PP_0793 0.62 -2.1
911,282 + PP_0793 0.63 -3.0
911,282 + PP_0793 0.63 -0.8
911,282 + PP_0793 0.63 -4.9
911,301 + PP_0793 0.63 -1.4
911,302 - PP_0793 0.63 -1.5
911,487 + PP_0793 0.70 -1.0
911,686 + PP_0793 0.77 -1.8
911,687 - PP_0793 0.77 -1.0
911,687 - PP_0793 0.77 -1.5
911,817 + PP_0793 0.81 +1.2
911,817 + PP_0793 0.81 -3.2
911,922 + PP_0793 0.85 +0.2
912,013 + PP_0793 0.88 +0.5
912,014 - PP_0793 0.88 -0.8
912,081 - -3.1
912,387 + -2.2
912,510 - PP_0794 0.17 -2.9
912,621 + PP_0794 0.29 -0.8
912,622 - PP_0794 0.29 -1.8
912,622 - PP_0794 0.29 -0.3
912,833 + PP_0794 0.51 +0.2
912,833 + PP_0794 0.51 +1.2
912,834 - PP_0794 0.51 -2.1
912,904 - PP_0794 0.59 -2.4
913,304 - -3.7
913,304 - -0.4
913,339 + -2.1
913,340 - -2.2
913,340 - -1.4

Or see this region's nucleotide sequence