Strain Fitness in Pseudomonas putida KT2440 around PP_4420

Experiment: Ammonium chloride and TNT (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride and TNT (N)
5,013,552	+				-1.0
5,013,552	+				+1.4
5,013,553	-				+0.3
5,013,553	-				-0.7
5,013,553	-				-0.9
5,013,723	+		PP_4418	0.49	+0.8
5,013,754	+		PP_4418	0.58	-0.0
5,013,754	+		PP_4418	0.58	-0.1
5,013,755	-		PP_4418	0.59	-1.3
5,013,755	-		PP_4418	0.59	-1.1
5,013,755	-		PP_4418	0.59	+0.6
5,013,873	-				+1.1
5,013,873	-				+0.6
5,013,921	+				+0.3
5,013,922	-				-1.0
5,013,922	-				+0.0
5,013,922	-				+0.4
5,013,922	-				-0.3
5,013,922	-				-3.5
5,013,939	+				-1.4
5,013,940	-				+2.0
5,014,010	+				+1.0
5,014,010	+				-0.3
5,014,010	+				-0.5
5,014,011	-				+0.0
5,014,011	-				+0.1
5,014,011	-				-1.9
5,014,011	-				+0.2
5,014,011	-				-0.4
5,014,011	-				-0.3
5,014,023	+				+0.9
5,014,023	+				-0.9
5,014,023	+				-0.4
5,014,024	-				-1.6
5,014,024	-				+0.7
5,014,099	+				+0.1
5,014,113	+				-0.3
5,014,113	+				+0.3
5,014,114	-				+1.6
5,014,114	-				-0.8
5,014,117	+				-1.1
5,014,117	+				-0.2
5,014,117	+				-0.9
5,014,117	+				+1.0
5,014,117	+				+1.6
5,014,117	+				-0.3
5,014,118	-				+0.9
5,014,118	-				+1.4
5,014,118	-				-0.3
5,014,118	-				+1.1
5,014,118	-				+0.2
5,014,118	-				+0.8
5,014,118	-				+1.5
5,014,118	-				+1.0
5,014,129	-				-1.0
5,014,157	+				-2.0
5,014,208	-				+0.2
5,014,208	-				-0.4
5,014,263	-		PP_4419	0.24	+0.1
5,014,446	+		PP_4419	0.83	-0.6
5,014,446	+		PP_4419	0.83	+1.1
5,014,456	+		PP_4419	0.86	+0.7
5,014,489	+				+0.2
5,014,489	+				-0.7
5,014,490	-				+1.0
5,014,568	-				-0.3
5,014,570	+				+1.0
5,014,571	-				-0.6
5,014,571	-				-0.5
5,014,571	-				-0.3
5,014,571	-				-0.4
5,014,584	+				-0.7
5,014,584	+				+0.5
5,014,584	+				-1.3
5,014,675	-		PP_4420	0.16	-2.3
5,014,777	+		PP_4420	0.29	-0.3
5,014,777	+		PP_4420	0.29	+0.2
5,014,777	+		PP_4420	0.29	-0.2
5,014,778	-		PP_4420	0.29	-0.9
5,014,778	-		PP_4420	0.29	-0.4
5,014,778	-		PP_4420	0.29	-1.5
5,014,778	-		PP_4420	0.29	-1.0
5,014,778	-		PP_4420	0.29	+0.3
5,014,783	+		PP_4420	0.30	-1.3
5,014,784	-		PP_4420	0.30	-0.4
5,014,822	-		PP_4420	0.34	+2.1
5,014,882	+		PP_4420	0.42	-0.8
5,014,882	+		PP_4420	0.42	-0.6
5,014,883	-		PP_4420	0.42	+0.2
5,014,883	-				+0.7
5,014,909	+		PP_4420	0.45	-0.4
5,014,910	-		PP_4420	0.45	-1.0
5,014,910	-		PP_4420	0.45	+0.2
5,014,910	-		PP_4420	0.45	-1.5
5,014,933	+		PP_4420	0.48	-0.2
5,014,933	+		PP_4420	0.48	-0.2
5,014,933	+		PP_4420	0.48	-0.4
5,015,011	-		PP_4420	0.58	+1.7
5,015,039	+		PP_4420	0.61	-1.2
5,015,039	+		PP_4420	0.61	-0.1
5,015,039	+		PP_4420	0.61	-0.0
5,015,039	+		PP_4420	0.61	-1.5
5,015,040	-		PP_4420	0.61	-1.1
5,015,040	-		PP_4420	0.61	+0.6
5,015,068	+		PP_4420	0.65	-0.2
5,015,069	-		PP_4420	0.65	-1.0
5,015,121	+		PP_4420	0.71	-0.8
5,015,122	-				-0.5
5,015,122	-		PP_4420	0.71	-0.9
5,015,136	+		PP_4420	0.73	-0.9
5,015,148	+		PP_4420	0.75	-0.6
5,015,149	-		PP_4420	0.75	-0.7
5,015,168	+		PP_4420	0.77	+0.1
5,015,169	-		PP_4420	0.77	+0.2
5,015,169	-		PP_4420	0.77	+0.2
5,015,175	+		PP_4420	0.78	+1.4
5,015,210	-		PP_4420	0.82	-1.1
5,015,210	-		PP_4420	0.82	-0.4
5,015,249	-		PP_4420	0.87	+0.6
5,015,263	+		PP_4420	0.89	-0.4
5,015,264	-		PP_4420	0.89	-0.8
5,015,264	-		PP_4420	0.89	-0.0
5,015,357	+				-0.2
5,015,357	+				-0.5
5,015,357	+				-0.7
5,015,357	+				-0.1
5,015,357	+				-0.3
5,015,358	-				-0.6
5,015,363	+				+0.3
5,015,363	+				+0.0
5,015,363	+				+0.1
5,015,364	-				+0.6
5,015,364	-				-0.6
5,015,364	-				-1.1
5,015,428	-				+0.0
5,015,472	+				-0.7
5,015,472	+				+1.1
5,015,472	+				-0.5
5,015,472	+				-0.1
5,015,472	+				+0.7
5,015,472	+				-0.6
5,015,473	-				+0.5
5,015,473	-				-0.6
5,015,473	-				+0.6
5,015,473	-				-1.1
5,015,473	-				-0.9
5,015,517	-				+0.1
5,015,517	-				-0.4
5,015,526	+				+0.7
5,015,526	+				-1.9
5,015,526	+				-0.3
5,015,526	+				-0.9
5,015,527	-				-0.7
5,015,527	-				+0.4
5,015,527	-				+0.1
5,015,527	-				+0.0
5,015,527	-				+0.7
5,015,527	-				+0.7
5,015,566	-		PP_5679	0.19	-0.3
5,015,566	-		PP_5679	0.19	-0.4
5,015,595	+		PP_5679	0.33	-0.4
5,015,595	+		PP_5679	0.33	+0.4
5,015,595	+		PP_5679	0.33	-1.0
5,015,595	+		PP_5679	0.33	-0.7
5,015,596	-		PP_5679	0.33	+0.9
5,015,596	-		PP_5679	0.33	+0.2
5,015,596	-		PP_5679	0.33	-0.3
5,015,596	-		PP_5679	0.33	-1.0
5,015,695	+		PP_5679	0.80	+0.6
5,015,695	+		PP_5679	0.80	-1.5
5,015,695	+		PP_5679	0.80	-0.7
5,015,695	+		PP_5679	0.80	+0.1
5,015,695	+		PP_5679	0.80	+4.0
5,015,696	-		PP_5679	0.80	-0.5
5,015,696	-		PP_5679	0.80	+0.7
5,015,696	-		PP_5679	0.80	-0.6
5,015,696	-		PP_5679	0.80	-0.2
5,015,696	-		PP_5679	0.80	-0.6
5,015,696	-		PP_5679	0.80	+0.1
5,015,696	-		PP_5679	0.80	+0.4
5,015,697	+		PP_5679	0.81	-0.3
5,015,697	+		PP_5679	0.81	+0.2
5,015,697	+		PP_5679	0.81	+1.0
5,015,697	+		PP_5679	0.81	-0.5
5,015,698	-		PP_5679	0.81	+1.1
5,015,698	-		PP_5679	0.81	+0.2
5,015,698	-		PP_5679	0.81	-0.3
5,015,698	-		PP_5679	0.81	-0.3
5,015,698	-		PP_5679	0.81	-0.4
5,015,698	-		PP_5679	0.81	+0.6
5,015,698	-		PP_5679	0.81	+1.3
5,015,702	-		PP_5679	0.83	-1.3
5,015,740	+				+0.1
5,015,740	+				-0.7
5,015,773	+				+0.4
5,015,773	+				-0.0
5,015,773	+				-1.0
5,015,773	+				-0.6
5,015,774	-				+1.7
5,015,774	-				-0.4
5,015,774	-				+0.7
5,015,774	-				+0.5
5,015,825	+				+1.0
5,015,825	+				-0.1
5,015,826	-				+0.7
5,015,826	-				-0.3
5,015,826	-				-1.3
5,015,826	-				-0.8
5,015,826	-				-0.0
5,015,826	-				-1.6
5,015,826	-				+0.4
5,015,841	-				+0.3
5,015,841	-				+0.7
5,015,884	+				-0.9
5,015,885	-				+1.2
5,015,890	+				-0.9
5,015,890	+				+0.0
5,015,890	+				+0.1
5,015,891	-				+0.1
5,015,891	-				-0.3
5,015,891	-				+0.1
5,015,891	-				-0.0
5,015,911	+				+1.5
5,015,924	-				-0.6
5,015,937	+				-0.7
5,015,937	+				+0.0
5,015,938	-				-0.9
5,015,938	-				+0.8
5,016,093	+				+0.3
5,016,281	+		PP_4421	0.22	+0.5
5,016,282	-		PP_4421	0.22	+0.1
5,016,282	-		PP_4421	0.22	+0.4
5,016,282	-		PP_4421	0.22	+0.4