Strain Fitness in Pseudomonas putida KT2440 around PP_3681

Experiment: Ammonium chloride and TNT (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride and TNT (N)
4,183,231	+		PP_3680	0.50	+2.0
4,183,233	+		PP_3680	0.50	+0.0
4,183,233	+		PP_3680	0.50	+0.8
4,183,279	+		PP_3680	0.53	-0.0
4,183,280	-		PP_3680	0.53	+1.1
4,183,280	-		PP_3680	0.53	+0.5
4,183,393	+		PP_3680	0.58	-1.2
4,183,393	+		PP_3680	0.58	-0.5
4,183,393	+		PP_3680	0.58	+0.1
4,183,466	-		PP_3680	0.62	-0.3
4,183,466	-		PP_3680	0.62	-0.9
4,183,507	+		PP_3680	0.64	-0.1
4,183,526	+		PP_3680	0.65	+0.1
4,183,542	+		PP_3680	0.66	+0.3
4,183,560	-		PP_3680	0.67	-0.5
4,183,578	+		PP_3680	0.68	-0.6
4,183,578	+		PP_3680	0.68	+0.0
4,183,578	+		PP_3680	0.68	+1.4
4,183,600	+		PP_3680	0.69	+0.6
4,183,600	+		PP_3680	0.69	+0.0
4,183,601	-		PP_3680	0.69	+0.3
4,183,601	-		PP_3680	0.69	-2.2
4,183,671	+		PP_3680	0.72	-1.1
4,183,671	+		PP_3680	0.72	-0.9
4,183,671	+		PP_3680	0.72	+1.1
4,183,671	+		PP_3680	0.72	+0.9
4,183,680	+				+0.1
4,183,680	+		PP_3680	0.73	-0.6
4,183,680	+		PP_3680	0.73	-0.6
4,183,681	-		PP_3680	0.73	+0.6
4,183,681	-		PP_3680	0.73	-0.6
4,183,681	-		PP_3680	0.73	+0.2
4,183,681	-		PP_3680	0.73	-0.1
4,183,681	-		PP_3680	0.73	-0.3
4,183,681	-				-2.5
4,183,697	+		PP_3680	0.74	-0.3
4,183,738	+		PP_3680	0.76	+0.4
4,183,738	+		PP_3680	0.76	+0.9
4,183,738	+		PP_3680	0.76	-0.5
4,183,738	+		PP_3680	0.76	-0.4
4,183,738	+		PP_3680	0.76	+0.2
4,183,739	-		PP_3680	0.76	+0.5
4,183,761	-		PP_3680	0.77	-0.7
4,183,761	-		PP_3680	0.77	-0.7
4,183,770	+		PP_3680	0.77	-0.0
4,183,776	+		PP_3680	0.77	-1.2
4,183,776	+		PP_3680	0.77	+0.5
4,183,776	+		PP_3680	0.77	+0.2
4,183,776	+		PP_3680	0.77	-0.0
4,183,776	+		PP_3680	0.77	+0.2
4,183,776	+		PP_3680	0.77	-1.2
4,183,776	+		PP_3680	0.77	+0.6
4,183,777	-		PP_3680	0.78	+0.2
4,183,777	-		PP_3680	0.78	+0.3
4,183,777	-		PP_3680	0.78	-0.1
4,183,828	-		PP_3680	0.80	-2.0
4,183,890	-		PP_3680	0.83	+0.9
4,183,905	-		PP_3680	0.84	-0.3
4,183,905	-		PP_3680	0.84	+0.5
4,183,905	-		PP_3680	0.84	+0.5
4,184,041	+				-0.2
4,184,041	+				-0.1
4,184,074	+				-0.4
4,184,075	-				+0.3
4,184,100	+				+1.7
4,184,162	+				+0.2
4,184,260	+				-1.3
4,184,350	+				+0.2
4,184,371	-				+0.0
4,184,371	-				-0.9
4,184,371	-				-1.2
4,184,371	-				-0.9
4,184,371	-				+0.1
4,184,700	+		PP_3681	0.29	-0.4
4,184,701	-		PP_3681	0.29	-0.6
4,184,748	+		PP_3681	0.32	+1.1
4,184,862	+		PP_3681	0.39	+0.3
4,184,862	+		PP_3681	0.39	-1.2
4,184,862	+		PP_3681	0.39	+0.4
4,184,862	+		PP_3681	0.39	-0.2
4,184,863	-		PP_3681	0.39	-0.9
4,184,863	-		PP_3681	0.39	-0.2
4,184,863	-		PP_3681	0.39	-0.4
4,184,863	-				-0.4
4,184,930	-		PP_3681	0.43	-0.0
4,184,930	-		PP_3681	0.43	-0.9
4,184,930	-		PP_3681	0.43	-0.0
4,185,115	+		PP_3681	0.54	-0.8
4,185,115	+		PP_3681	0.54	-0.4
4,185,115	+		PP_3681	0.54	-0.1
4,185,116	-		PP_3681	0.54	-0.8
4,185,116	-		PP_3681	0.54	-0.5
4,185,116	-		PP_3681	0.54	+0.3
4,185,116	-		PP_3681	0.54	-0.4
4,185,141	+		PP_3681	0.55	-0.5
4,185,142	-		PP_3681	0.55	+0.3
4,185,249	+		PP_3681	0.62	-1.4
4,185,250	-		PP_3681	0.62	-1.9
4,185,318	+				+1.5
4,185,366	+		PP_3681	0.69	+0.1
4,185,367	-		PP_3681	0.69	-0.2
4,185,418	-		PP_3681	0.72	-0.6
4,185,460	+		PP_3681	0.75	-1.1
4,185,460	+		PP_3681	0.75	-0.7
4,185,460	+		PP_3681	0.75	-0.6
4,185,460	+		PP_3681	0.75	-1.1
4,185,460	+		PP_3681	0.75	-0.2
4,185,461	-		PP_3681	0.75	-0.3
4,185,461	-		PP_3681	0.75	+0.8
4,185,461	-		PP_3681	0.75	-0.5
4,185,461	-		PP_3681	0.75	+0.1
4,185,461	-		PP_3681	0.75	-0.9
4,185,461	-		PP_3681	0.75	+0.1
4,185,465	+		PP_3681	0.75	-0.6
4,185,495	+		PP_3681	0.77	-0.8
4,185,495	+		PP_3681	0.77	+0.7
4,185,496	-		PP_3681	0.77	-0.9
4,185,508	+		PP_3681	0.77	-0.0
4,185,508	+		PP_3681	0.77	+0.6
4,185,509	-		PP_3681	0.78	-1.8
4,185,509	-		PP_3681	0.78	-0.9
4,185,509	-		PP_3681	0.78	-0.4
4,185,727	-				-0.3
4,185,780	+				-0.7
4,185,780	+				+0.4
4,185,781	-				-1.6
4,185,795	-				-0.9
4,185,795	-				-0.8
4,185,795	-				+0.3
4,185,795	-				-0.8
4,185,877	+				-0.3
4,185,877	+				-0.4
4,185,877	+				+0.1
4,185,878	-				+0.1
4,185,879	+				-0.9
4,185,879	+				-0.7
4,185,879	+				-0.9
4,185,880	-				-0.4
4,185,880	-				-0.4
4,185,880	-				+0.0
4,185,880	-				+1.1
4,185,880	-				+0.1
4,185,880	-				-0.5
4,185,917	+				+0.7
4,185,917	+				-1.0
4,185,918	-				-1.2
4,185,918	-				-0.1
4,185,918	-				-1.2
4,185,924	+				-0.3
4,185,924	+				+1.3
4,185,924	+				-0.4
4,185,924	+				-0.4
4,185,924	+				+0.4
4,185,924	+				-0.5
4,185,925	-				+0.2
4,185,925	-				-0.8
4,185,962	+		PP_3682	0.20	-0.2
4,186,055	+		PP_3682	0.80	-1.6
4,186,055	+		PP_3682	0.80	+0.1
4,186,056	-		PP_3682	0.81	-0.3
4,186,064	+		PP_3682	0.86	-0.1
4,186,064	+		PP_3682	0.86	-0.4
4,186,064	+				-0.5
4,186,065	-		PP_3682	0.87	+0.6
4,186,091	+				+1.4
4,186,091	+				-1.1
4,186,092	-				-0.7
4,186,092	-				+0.8
4,186,138	+				+0.1
4,186,139	-				-0.4
4,186,139	-				-0.3
4,186,139	-				-0.8
4,186,142	+				+0.3
4,186,142	+				+0.2
4,186,143	-				-0.2
4,186,143	-				+0.4
4,186,181	+				-0.1
4,186,181	+				+0.0
4,186,181	+				+0.5
4,186,182	-				+0.0
4,186,182	-				+0.2
4,186,228	+				+1.0
4,186,228	+				-0.3
4,186,229	-				-0.2
4,186,283	+				+0.0
4,186,284	-				-0.3
4,186,284	-				+0.1
4,186,327	-				+0.2
4,186,387	+				-0.7
4,186,388	-				+0.4
4,186,417	+				+0.6
4,186,417	+				-0.5
4,186,426	+				-0.7
4,186,426	+				+0.6
4,186,426	+				-0.5
4,186,426	+				-0.2
4,186,494	+				+0.5
4,186,494	+				-2.0
4,186,494	+				-0.5
4,186,494	+				+1.5
4,186,494	+				-0.9
4,186,494	+				-1.1
4,186,495	-				-0.9
4,186,495	-				-0.7
4,186,495	-				-0.4
4,186,501	-				-1.5
4,186,516	+				-0.1
4,186,517	-				+1.6
4,186,517	-				+0.3
4,186,517	-				+0.4
4,186,526	+				-0.6
4,186,526	+				-0.8
4,186,526	+				+0.0
4,186,527	-				+0.0
4,186,527	-				+0.0
4,186,527	-				+0.9
4,186,527	-				+0.5
4,186,597	+				+0.3
4,186,610	+				-0.3
4,186,759	+				-1.5
4,186,774	+				+0.1
4,186,774	+				-0.9
4,186,774	+				-0.9
4,186,778	+				+2.1
4,186,778	+				-0.1
4,186,779	-		PP_3683	0.10	+0.6
4,186,779	-		PP_3683	0.10	+0.5
4,186,779	-		PP_3683	0.10	-0.7
4,186,836	+		PP_3683	0.15	+0.1
4,186,837	-		PP_3683	0.15	+1.7
4,186,837	-		PP_3683	0.15	-0.5
4,186,837	-		PP_3683	0.15	-0.6