Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0209 and PP_0210 overlap by 4 nucleotides PP_0210 and PP_0211 overlap by 1 nucleotides PP_0211 and PP_0213 are separated by 484 nucleotides
PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522
_0209
PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484
_0210
PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765
_0211
PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692
_0213
Position (kb) 262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.518 kb on + strand at 261.518 kb on + strand at 261.519 kb on - strand at 261.781 kb on + strand, within PP_0210 at 261.781 kb on + strand, within PP_0210 at 261.782 kb on - strand, within PP_0210 at 261.782 kb on - strand, within PP_0210 at 261.816 kb on - strand, within PP_0210 at 261.816 kb on - strand, within PP_0210 at 261.890 kb on - strand, within PP_0210 at 261.968 kb on - strand, within PP_0210 at 262.180 kb on + strand, within PP_0210 at 262.193 kb on - strand, within PP_0210 at 262.249 kb on + strand, within PP_0210 at 262.249 kb on + strand, within PP_0210 at 262.288 kb on - strand, within PP_0210 at 262.682 kb on + strand, within PP_0211 at 262.683 kb on - strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.689 kb on + strand, within PP_0211 at 262.690 kb on - strand, within PP_0211 at 262.727 kb on + strand, within PP_0211 at 262.728 kb on - strand, within PP_0211 at 262.728 kb on - strand, within PP_0211 at 262.739 kb on + strand at 262.739 kb on + strand at 262.740 kb on - strand at 262.838 kb on - strand at 262.902 kb on + strand at 263.052 kb on - strand at 263.147 kb on - strand at 263.147 kb on - strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.289 kb on + strand at 263.290 kb on - strand at 263.290 kb on - strand at 263.290 kb on - strand at 263.291 kb on + strand at 263.291 kb on + strand at 263.292 kb on - strand at 263.292 kb on - strand at 263.292 kb on - strand at 263.297 kb on - strand at 263.628 kb on + strand, within PP_0213 at 263.628 kb on + strand, within PP_0213 at 263.628 kb on + strand, within PP_0213
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 261,518 + -1.3 261,518 + -0.5 261,519 - +0.4 261,781 + PP_0210 0.27 -2.5 261,781 + PP_0210 0.27 -0.0 261,782 - PP_0210 0.27 +0.9 261,782 - PP_0210 0.27 -0.7 261,816 - PP_0210 0.31 -0.7 261,816 - PP_0210 0.31 -0.1 261,890 - PP_0210 0.38 -0.7 261,968 - PP_0210 0.46 +0.3 262,180 + PP_0210 0.68 +0.2 262,193 - PP_0210 0.70 -0.7 262,249 + PP_0210 0.76 +0.5 262,249 + PP_0210 0.76 +0.4 262,288 - PP_0210 0.80 +0.9 262,682 + PP_0211 0.70 -0.1 262,683 - PP_0211 0.71 -1.7 262,689 + PP_0211 0.73 +1.2 262,689 + PP_0211 0.73 -1.3 262,689 + PP_0211 0.73 -1.2 262,689 + PP_0211 0.73 -1.5 262,690 - PP_0211 0.73 -1.1 262,727 + PP_0211 0.86 -0.3 262,728 - PP_0211 0.87 -1.5 262,728 - PP_0211 0.87 +1.3 262,739 + -0.1 262,739 + -1.0 262,740 - +0.5 262,838 - -0.8 262,902 + -0.6 263,052 - +0.1 263,147 - +2.0 263,147 - +1.5 263,289 + -0.7 263,289 + +0.9 263,289 + -0.4 263,289 + +1.1 263,289 + -0.6 263,289 + -0.4 263,289 + -2.5 263,290 - -0.1 263,290 - +0.5 263,290 - -2.4 263,291 + +0.1 263,291 + +0.3 263,292 - -0.3 263,292 - +1.3 263,292 - -3.0 263,297 - -0.4 263,628 + PP_0213 0.26 +1.1 263,628 + PP_0213 0.26 -0.3 263,628 + PP_0213 0.26 +1.7
Or see this region's nucleotide sequence