Experiment: Fr_1000_E3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ylcG and ybcQ are separated by 85 nucleotides ybcQ and nmpC are separated by 189 nucleotides nmpC and insH-2 are separated by 150 nucleotides
b4509: ylcG - DLP12 prophage; predicted protein (NCBI), at 572,953 to 573,093
ylcG
b0551: ybcQ - DLP12 prophage; predicted antitermination protein (NCBI), at 573,179 to 573,562
ybcQ
b0553: nmpC - DLP12 prophage; truncated outer membrane porin (pseudogene) (RefSeq), at 573,752 to 573,809
nmpC
b0552: insH-2 - DLP12 prophage; IS5 transposase and trans-activator (NCBI), at 573,960 to 574,976
insH-2
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1 at 572.981 kb on - strand, within ylcG at 573.031 kb on + strand, within ylcG at 573.031 kb on + strand, within ylcG at 573.078 kb on - strand, within ylcG at 573.080 kb on + strand at 573.088 kb on - strand at 573.094 kb on + strand at 573.141 kb on + strand at 573.164 kb on + strand at 573.164 kb on + strand at 573.183 kb on + strand at 573.186 kb on + strand at 573.224 kb on + strand, within ybcQ at 573.224 kb on + strand, within ybcQ at 573.231 kb on + strand, within ybcQ at 573.231 kb on + strand, within ybcQ at 573.239 kb on + strand, within ybcQ at 573.242 kb on + strand, within ybcQ at 573.247 kb on - strand, within ybcQ at 573.267 kb on + strand, within ybcQ at 573.267 kb on + strand, within ybcQ at 573.310 kb on + strand, within ybcQ at 573.310 kb on + strand, within ybcQ at 573.331 kb on - strand, within ybcQ at 573.335 kb on + strand, within ybcQ at 573.335 kb on + strand, within ybcQ at 573.343 kb on + strand, within ybcQ at 573.343 kb on + strand, within ybcQ at 573.343 kb on + strand, within ybcQ at 573.344 kb on + strand, within ybcQ at 573.344 kb on + strand, within ybcQ at 573.344 kb on + strand, within ybcQ at 573.358 kb on + strand, within ybcQ at 573.358 kb on + strand, within ybcQ at 573.411 kb on + strand, within ybcQ at 573.423 kb on + strand, within ybcQ at 573.423 kb on + strand, within ybcQ at 573.424 kb on + strand, within ybcQ at 573.430 kb on + strand, within ybcQ at 573.430 kb on + strand, within ybcQ at 573.434 kb on + strand, within ybcQ at 573.434 kb on + strand, within ybcQ at 573.434 kb on + strand, within ybcQ at 573.437 kb on + strand, within ybcQ at 573.437 kb on + strand, within ybcQ at 573.442 kb on + strand, within ybcQ at 573.442 kb on + strand, within ybcQ at 573.442 kb on + strand, within ybcQ at 573.442 kb on + strand, within ybcQ at 573.442 kb on + strand, within ybcQ at 573.442 kb on + strand, within ybcQ at 573.470 kb on + strand, within ybcQ at 573.488 kb on + strand, within ybcQ at 573.512 kb on + strand, within ybcQ at 573.652 kb on - strand at 573.652 kb on - strand at 573.665 kb on - strand at 573.665 kb on - strand at 573.665 kb on - strand at 573.665 kb on - strand at 573.665 kb on - strand at 573.678 kb on - strand at 573.678 kb on - strand at 573.678 kb on - strand at 573.684 kb on + strand at 573.687 kb on - strand at 573.687 kb on - strand at 573.691 kb on - strand at 573.706 kb on - strand at 573.707 kb on - strand at 573.707 kb on - strand at 573.712 kb on - strand at 573.731 kb on - strand at 573.731 kb on - strand at 573.731 kb on - strand at 573.731 kb on - strand at 573.758 kb on - strand, within nmpC at 573.758 kb on - strand, within nmpC at 573.758 kb on - strand, within nmpC at 573.767 kb on - strand, within nmpC at 573.767 kb on - strand, within nmpC at 573.767 kb on - strand, within nmpC at 573.767 kb on - strand, within nmpC at 573.767 kb on - strand, within nmpC at 573.768 kb on - strand, within nmpC at 573.777 kb on - strand, within nmpC at 573.777 kb on - strand, within nmpC at 573.777 kb on - strand, within nmpC at 573.777 kb on - strand, within nmpC at 573.777 kb on - strand, within nmpC at 573.777 kb on - strand, within nmpC at 573.777 kb on - strand, within nmpC at 573.778 kb on - strand, within nmpC at 573.778 kb on - strand, within nmpC at 573.780 kb on - strand, within nmpC at 573.780 kb on - strand, within nmpC at 573.792 kb on + strand, within nmpC at 573.792 kb on + strand, within nmpC at 573.795 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.801 kb on - strand, within nmpC at 573.803 kb on - strand, within nmpC at 573.816 kb on - strand at 573.827 kb on - strand at 574.996 kb on + strand at 574.996 kb on + strand at 575.006 kb on + strand at 575.006 kb on + strand at 575.077 kb on + strand at 575.102 kb on + strand at 575.121 kb on - strand at 575.130 kb on - strand at 575.130 kb on - strand at 575.130 kb on - strand at 575.131 kb on + strand at 575.140 kb on - strand at 575.140 kb on - strand at 575.180 kb on - strand at 575.180 kb on - strand at 575.319 kb on - strand at 575.388 kb on - strand at 575.407 kb on - strand at 575.458 kb on - strand at 575.484 kb on - strand at 575.499 kb on - strand at 575.499 kb on - strand at 575.524 kb on + strand at 575.537 kb on - strand at 575.542 kb on - strand at 575.542 kb on - strand at 575.554 kb on - strand at 575.582 kb on + strand at 575.635 kb on - strand at 575.682 kb on + strand at 575.682 kb on + strand at 575.682 kb on + strand at 575.685 kb on - strand at 575.688 kb on + strand at 575.690 kb on - strand at 575.697 kb on - strand at 575.697 kb on - strand at 575.698 kb on - strand at 575.714 kb on + strand at 575.722 kb on - strand at 575.773 kb on + strand at 575.774 kb on + strand at 575.827 kb on + strand at 575.830 kb on + strand at 575.872 kb on + strand at 575.878 kb on + strand at 575.882 kb on + strand at 575.882 kb on + strand at 575.887 kb on + strand at 575.887 kb on + strand at 575.890 kb on - strand at 575.901 kb on + strand at 575.909 kb on + strand at 575.909 kb on - strand at 575.912 kb on + strand at 575.912 kb on + strand at 575.924 kb on + strand at 575.933 kb on + strand at 575.941 kb on - strand at 575.941 kb on - strand at 575.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fr_1000_E3 remove 572,981 - ylcG b4509 0.20 +0.1 573,031 + ylcG b4509 0.55 +0.1 573,031 + ylcG b4509 0.55 -0.1 573,078 - ylcG b4509 0.89 -0.9 573,080 + -0.8 573,088 - -0.9 573,094 + -1.4 573,141 + +0.6 573,164 + -0.3 573,164 + -0.1 573,183 + -0.5 573,186 + -0.7 573,224 + ybcQ b0551 0.12 +0.3 573,224 + ybcQ b0551 0.12 -1.3 573,231 + ybcQ b0551 0.14 -0.9 573,231 + ybcQ b0551 0.14 -0.6 573,239 + ybcQ b0551 0.16 -0.7 573,242 + ybcQ b0551 0.16 -0.6 573,247 - ybcQ b0551 0.18 +0.1 573,267 + ybcQ b0551 0.23 -1.3 573,267 + ybcQ b0551 0.23 -0.3 573,310 + ybcQ b0551 0.34 -0.5 573,310 + ybcQ b0551 0.34 -2.0 573,331 - ybcQ b0551 0.40 +0.1 573,335 + ybcQ b0551 0.41 +0.7 573,335 + ybcQ b0551 0.41 -0.8 573,343 + ybcQ b0551 0.43 -0.5 573,343 + ybcQ b0551 0.43 +0.3 573,343 + ybcQ b0551 0.43 +0.6 573,344 + ybcQ b0551 0.43 -0.3 573,344 + ybcQ b0551 0.43 -1.4 573,344 + ybcQ b0551 0.43 -0.2 573,358 + ybcQ b0551 0.47 -0.9 573,358 + ybcQ b0551 0.47 -0.3 573,411 + ybcQ b0551 0.60 -1.1 573,423 + ybcQ b0551 0.64 -0.3 573,423 + ybcQ b0551 0.64 -0.8 573,424 + ybcQ b0551 0.64 -0.4 573,430 + ybcQ b0551 0.65 +0.2 573,430 + ybcQ b0551 0.65 +0.2 573,434 + ybcQ b0551 0.66 -1.3 573,434 + ybcQ b0551 0.66 +0.1 573,434 + ybcQ b0551 0.66 -0.3 573,437 + ybcQ b0551 0.67 +0.2 573,437 + ybcQ b0551 0.67 -1.0 573,442 + ybcQ b0551 0.68 -0.6 573,442 + ybcQ b0551 0.68 +0.2 573,442 + ybcQ b0551 0.68 +0.1 573,442 + ybcQ b0551 0.68 -0.2 573,442 + ybcQ b0551 0.68 +0.1 573,442 + ybcQ b0551 0.68 +0.4 573,470 + ybcQ b0551 0.76 -0.5 573,488 + ybcQ b0551 0.80 -0.9 573,512 + ybcQ b0551 0.87 +0.2 573,652 - -0.8 573,652 - +0.1 573,665 - +0.1 573,665 - -1.3 573,665 - -0.4 573,665 - -0.9 573,665 - -0.9 573,678 - -0.0 573,678 - -0.8 573,678 - +0.3 573,684 + +0.1 573,687 - +0.1 573,687 - +0.9 573,691 - -0.1 573,706 - -0.2 573,707 - +1.1 573,707 - -0.1 573,712 - -0.4 573,731 - -0.3 573,731 - -0.2 573,731 - +1.6 573,731 - -1.3 573,758 - nmpC b0553 0.10 -1.3 573,758 - nmpC b0553 0.10 -2.1 573,758 - nmpC b0553 0.10 +0.1 573,767 - nmpC b0553 0.26 -0.1 573,767 - nmpC b0553 0.26 +0.1 573,767 - nmpC b0553 0.26 +0.1 573,767 - nmpC b0553 0.26 -0.8 573,767 - nmpC b0553 0.26 -0.2 573,768 - nmpC b0553 0.28 -0.2 573,777 - nmpC b0553 0.43 -0.7 573,777 - nmpC b0553 0.43 -0.6 573,777 - nmpC b0553 0.43 -0.0 573,777 - nmpC b0553 0.43 +0.8 573,777 - nmpC b0553 0.43 -0.9 573,777 - nmpC b0553 0.43 +0.2 573,777 - nmpC b0553 0.43 -1.0 573,778 - nmpC b0553 0.45 +0.4 573,778 - nmpC b0553 0.45 -0.9 573,780 - nmpC b0553 0.48 -0.9 573,780 - nmpC b0553 0.48 +0.2 573,792 + nmpC b0553 0.69 -0.9 573,792 + nmpC b0553 0.69 +0.1 573,795 - nmpC b0553 0.74 -0.4 573,801 - nmpC b0553 0.84 +0.1 573,801 - nmpC b0553 0.84 -0.4 573,801 - nmpC b0553 0.84 +0.2 573,801 - nmpC b0553 0.84 +0.4 573,801 - nmpC b0553 0.84 +0.0 573,801 - nmpC b0553 0.84 +0.1 573,801 - nmpC b0553 0.84 -0.1 573,801 - nmpC b0553 0.84 -0.4 573,801 - nmpC b0553 0.84 +1.1 573,801 - nmpC b0553 0.84 -0.6 573,801 - nmpC b0553 0.84 +0.2 573,801 - nmpC b0553 0.84 -0.0 573,803 - nmpC b0553 0.88 +0.1 573,816 - -0.4 573,827 - -0.0 574,996 + +1.1 574,996 + -0.0 575,006 + +0.0 575,006 + -2.5 575,077 + -2.1 575,102 + -1.5 575,121 - +0.5 575,130 - +0.4 575,130 - -0.9 575,130 - +0.3 575,131 + +0.6 575,140 - -0.8 575,140 - -0.9 575,180 - +0.3 575,180 - -0.4 575,319 - -0.8 575,388 - +0.0 575,407 - +0.1 575,458 - -0.8 575,484 - -0.5 575,499 - -0.2 575,499 - -0.4 575,524 + -0.3 575,537 - +0.0 575,542 - -0.9 575,542 - -0.6 575,554 - -0.2 575,582 + -1.5 575,635 - +0.1 575,682 + +0.9 575,682 + -0.8 575,682 + -0.3 575,685 - -0.1 575,688 + -0.2 575,690 - -0.7 575,697 - -0.2 575,697 - -0.6 575,698 - -0.7 575,714 + +1.0 575,722 - -1.8 575,773 + +0.5 575,774 + +0.5 575,827 + -0.9 575,830 + -1.3 575,872 + +0.1 575,878 + -1.7 575,882 + -1.8 575,882 + -1.6 575,887 + +0.1 575,887 + -0.5 575,890 - -0.5 575,901 + -1.4 575,909 + +1.1 575,909 - -0.7 575,912 + -0.5 575,912 + +1.6 575,924 + -2.5 575,933 + -0.4 575,941 - -0.7 575,941 - +1.1 575,941 - +0.3
Or see this region's nucleotide sequence