Experiment: pUC18_phdP1_pSU18T_docP1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4984 and PP_4985 are separated by 163 nucleotides PP_4985 and PP_4986 are separated by 0 nucleotides PP_4986 and PP_4987 are separated by 203 nucleotides PP_4987 and PP_4988 overlap by 8 nucleotides
PP_4984: PP_4984 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 5,678,375 to 5,679,781
_4984
PP_4985: PP_4985 - 16S rRNA m3U1498 methyltransferase, at 5,679,945 to 5,680,664
_4985
PP_4986: PP_4986 - Channel protein, hemolysin III family, at 5,680,665 to 5,681,282
_4986
PP_4987: PP_4987 - putative Chemotaxis protein, at 5,681,486 to 5,681,959
_4987
PP_4988: PP_4988 - signal transduction histidine kinase CheA/CheY-like receiver, at 5,681,952 to 5,686,892
_4988
Position (kb) 5680
5681
5682 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5679.741 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.927 kb on + strand at 5679.928 kb on - strand at 5679.932 kb on - strand at 5680.021 kb on - strand, within PP_4985 at 5680.021 kb on - strand, within PP_4985 at 5680.021 kb on - strand, within PP_4985 at 5680.090 kb on - strand, within PP_4985 at 5680.090 kb on - strand, within PP_4985 at 5680.090 kb on - strand, within PP_4985 at 5680.257 kb on + strand, within PP_4985 at 5680.377 kb on - strand, within PP_4985 at 5680.377 kb on - strand, within PP_4985 at 5680.532 kb on + strand, within PP_4985 at 5680.533 kb on - strand, within PP_4985 at 5680.666 kb on + strand at 5680.667 kb on - strand at 5680.675 kb on + strand at 5680.789 kb on + strand, within PP_4986 at 5680.790 kb on - strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.888 kb on + strand, within PP_4986 at 5680.889 kb on - strand, within PP_4986 at 5680.889 kb on - strand, within PP_4986 at 5681.026 kb on + strand, within PP_4986 at 5681.027 kb on - strand, within PP_4986 at 5681.027 kb on - strand, within PP_4986 at 5681.048 kb on - strand, within PP_4986 at 5681.048 kb on - strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.125 kb on + strand, within PP_4986 at 5681.149 kb on + strand, within PP_4986 at 5681.223 kb on - strand at 5681.275 kb on + strand at 5681.276 kb on - strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.278 kb on + strand at 5681.279 kb on - strand at 5681.279 kb on - strand at 5681.488 kb on - strand at 5681.617 kb on - strand, within PP_4987 at 5681.846 kb on - strand, within PP_4987 at 5681.846 kb on - strand, within PP_4987 at 5682.007 kb on + strand at 5682.007 kb on + strand at 5682.219 kb on + strand at 5682.219 kb on + strand at 5682.219 kb on + strand at 5682.220 kb on - strand at 5682.220 kb on - strand at 5682.220 kb on - strand at 5682.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pUC18_phdP1_pSU18T_docP1 remove 5,679,741 + -1.2 5,679,927 + -1.0 5,679,927 + +0.1 5,679,927 + +0.7 5,679,927 + +0.8 5,679,927 + -1.2 5,679,928 - -2.4 5,679,932 - +0.3 5,680,021 - PP_4985 0.11 -0.5 5,680,021 - PP_4985 0.11 -0.4 5,680,021 - PP_4985 0.11 +1.4 5,680,090 - PP_4985 0.20 +0.4 5,680,090 - PP_4985 0.20 +0.5 5,680,090 - PP_4985 0.20 -0.0 5,680,257 + PP_4985 0.43 +0.2 5,680,377 - PP_4985 0.60 +0.9 5,680,377 - PP_4985 0.60 -0.1 5,680,532 + PP_4985 0.82 -0.1 5,680,533 - PP_4985 0.82 -0.7 5,680,666 + -0.5 5,680,667 - +1.4 5,680,675 + -0.8 5,680,789 + PP_4986 0.20 +0.5 5,680,790 - PP_4986 0.20 +1.6 5,680,888 + PP_4986 0.36 +0.2 5,680,888 + PP_4986 0.36 -0.2 5,680,888 + PP_4986 0.36 +1.2 5,680,889 - PP_4986 0.36 -0.1 5,680,889 - PP_4986 0.36 +0.3 5,681,026 + PP_4986 0.58 +1.5 5,681,027 - PP_4986 0.59 +0.4 5,681,027 - PP_4986 0.59 -0.7 5,681,048 - PP_4986 0.62 +0.3 5,681,048 - PP_4986 0.62 +1.6 5,681,125 + PP_4986 0.74 +1.3 5,681,125 + PP_4986 0.74 -0.5 5,681,125 + PP_4986 0.74 -0.3 5,681,125 + PP_4986 0.74 +1.3 5,681,149 + PP_4986 0.78 +0.5 5,681,223 - -0.3 5,681,275 + +1.0 5,681,276 - -0.7 5,681,278 + +0.9 5,681,278 + -0.4 5,681,278 + -0.1 5,681,278 + +0.5 5,681,279 - -0.7 5,681,279 - -0.8 5,681,488 - +0.3 5,681,617 - PP_4987 0.28 +0.2 5,681,846 - PP_4987 0.76 +0.0 5,681,846 - PP_4987 0.76 -1.3 5,682,007 + -0.0 5,682,007 + +1.8 5,682,219 + +0.3 5,682,219 + +1.2 5,682,219 + -0.8 5,682,220 - -0.2 5,682,220 - -0.6 5,682,220 - +0.7 5,682,220 - -0.1
Or see this region's nucleotide sequence