Strain Fitness in Escherichia coli BW25113 around b4431

Experiment: vcDART vector transformation; liquid outgrowth assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	vcDART vector transformation; liquid outgrowth assay
1,767,471	-	ydiK	b1688	0.34	-1.2
1,767,542	+	ydiK	b1688	0.40	-0.2
1,767,589	+	ydiK	b1688	0.44	-2.0
1,767,631	-	ydiK	b1688	0.48	+0.8
1,767,747	+	ydiK	b1688	0.58	+0.7
1,767,784	-	ydiK	b1688	0.62	-1.4
1,767,814	-	ydiK	b1688	0.64	+0.3
1,767,850	-	ydiK	b1688	0.68	+0.3
1,767,962	-	ydiK	b1688	0.78	-1.8
1,768,086	-	ydiK	b1688	0.89	+1.7
1,768,225	+				+0.6
1,768,225	+				+2.0
1,768,227	+				-1.4
1,768,290	-				+0.2
1,768,307	+				-2.1
1,768,307	+				-0.4
1,768,312	-				-0.5
1,768,382	+				-2.1
1,768,390	-				-0.1
1,768,466	-	rprA	b4431	0.66	-2.3
1,768,471	-	rprA	b4431	0.71	-1.2
1,768,479	+	rprA	b4431	0.78	+2.0
1,768,516	+				+4.0
1,768,551	+				+0.2
1,768,559	-				-1.0
1,768,561	+				-1.1
1,768,561	+				-1.5
1,768,569	+				+1.0
1,768,569	+				+0.9
1,768,569	-				-0.7
1,768,571	+				+1.8
1,768,654	+				+4.0
1,768,661	-				+2.9
1,768,685	+	b1689	b1689	0.13	+1.0
1,768,714	-	b1689	b1689	0.21	-0.6
1,768,720	+	b1689	b1689	0.23	+1.6
1,768,765	+	b1689	b1689	0.35	+0.0
1,768,765	+	b1689	b1689	0.35	-0.7
1,768,781	-	b1689	b1689	0.40	+3.0
1,768,788	+	b1689	b1689	0.42	-1.5
1,768,788	+	b1689	b1689	0.42	-1.9
1,768,905	+	b1689	b1689	0.75	+0.3
1,768,905	+	b1689	b1689	0.75	-0.4
1,768,905	+	b1689	b1689	0.75	-0.4
1,768,913	-	b1689	b1689	0.77	+4.0
1,768,976	+				+0.9
1,769,159	-				+1.5
1,769,186	-				+4.0
1,769,198	+				+4.0
1,769,223	+	ydiM	b1690	0.11	+4.3
1,769,230	+	ydiM	b1690	0.11	+4.0
1,769,238	-	ydiM	b1690	0.12	+4.0
1,769,244	+	ydiM	b1690	0.12	+1.5
1,769,244	+	ydiM	b1690	0.12	+0.0
1,769,323	+	ydiM	b1690	0.19	+2.0
1,769,331	-	ydiM	b1690	0.19	+4.0
1,769,341	-	ydiM	b1690	0.20	+4.0
1,769,401	+	ydiM	b1690	0.25	+4.0
1,769,461	+	ydiM	b1690	0.30	+0.7
1,769,464	+	ydiM	b1690	0.30	+2.2