Strain Fitness in Escherichia coli BW25113 around b0899

Experiment: vcDART vector transformation; liquid outgrowth assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	vcDART vector transformation; liquid outgrowth assay
945,463	-	ycaD	b0898	0.32	+2.2
945,549	+	ycaD	b0898	0.40	+0.8
945,549	+	ycaD	b0898	0.40	+0.2
945,609	-	ycaD	b0898	0.45	-0.5
945,750	+				+2.7
945,750	+	ycaD	b0898	0.57	-0.6
945,755	+	ycaD	b0898	0.58	+1.1
945,792	-	ycaD	b0898	0.61	+1.2
945,792	-	ycaD	b0898	0.61	+3.7
945,806	+	ycaD	b0898	0.62	+1.0
945,847	-	ycaD	b0898	0.66	+3.4
945,901	+	ycaD	b0898	0.70	-1.6
945,901	+	ycaD	b0898	0.70	-0.6
945,919	+	ycaD	b0898	0.72	-0.7
945,994	+	ycaD	b0898	0.78	-0.9
946,054	+	ycaD	b0898	0.84	-0.8
946,060	+	ycaD	b0898	0.84	-0.7
946,064	+	ycaD	b0898	0.84	+0.9
946,064	+	ycaD	b0898	0.84	-0.3
946,072	+	ycaD	b0898	0.85	-1.0
946,077	+	ycaD	b0898	0.86	+1.7
946,077	+	ycaD	b0898	0.86	+0.0
946,084	+	ycaD	b0898	0.86	-0.3
946,107	+	ycaD	b0898	0.88	-0.0
946,107	+	ycaD	b0898	0.88	-2.3
946,144	+				-0.5
946,200	-				+3.7
946,200	-				+2.7
946,236	+				-1.8
946,248	+				+0.1
946,248	+				+1.8
946,256	+				-0.5
946,256	+				+0.3
946,392	-				-0.1
946,395	-				-0.1
946,406	+				+1.4
946,456	-				-0.7
946,456	-				-0.2
946,464	+				+1.2
946,464	-				-1.6
946,464	-				-1.5
946,472	-				+0.5
946,485	+				+3.7
946,485	+				+0.6
946,492	+				-0.6
946,492	+				+2.2
946,493	+				+0.1
946,493	+				+0.9
946,494	-				-0.5
946,495	-				-1.0
946,495	-				-1.4
946,495	-				+0.2
946,495	-				-1.1
946,506	+				+0.6
946,518	+				+1.2
946,518	+				-0.7
946,526	-				+0.3
946,547	-				-0.8
946,556	-				-1.5
946,563	-				-0.6
946,563	-				-1.3
946,563	-				-0.3
946,584	+				-0.3
946,605	+	b0899	b0899	0.11	+2.7
946,611	-	b0899	b0899	0.11	+2.7
946,611	-	b0899	b0899	0.11	+0.3
946,611	-	b0899	b0899	0.11	-0.6
946,612	-	b0899	b0899	0.11	-0.7
946,634	+	b0899	b0899	0.13	-2.2
946,642	-	b0899	b0899	0.13	-0.3
946,644	+	b0899	b0899	0.13	+0.7
946,644	+	b0899	b0899	0.13	+3.7
946,645	-	b0899	b0899	0.13	+0.1
946,653	-	b0899	b0899	0.14	-1.9
946,661	-	b0899	b0899	0.15	+0.6
946,661	-	b0899	b0899	0.15	-0.8
946,661	-	b0899	b0899	0.15	-0.1
946,662	+	b0899	b0899	0.15	-0.2
946,680	-	b0899	b0899	0.16	+0.5
946,680	-	b0899	b0899	0.16	+1.8
946,696	+	b0899	b0899	0.17	+1.9
946,697	+	b0899	b0899	0.17	-1.8
946,704	-	b0899	b0899	0.18	+0.2
946,704	-	b0899	b0899	0.18	+0.7
946,706	+	b0899	b0899	0.18	+3.7
946,706	+	b0899	b0899	0.18	-0.6
946,711	+	b0899	b0899	0.18	+1.2
946,737	-	b0899	b0899	0.20	-0.3
946,739	+	b0899	b0899	0.20	+0.9
946,743	+	b0899	b0899	0.20	+3.7
946,745	+	b0899	b0899	0.20	-0.8
946,847	-	b0899	b0899	0.28	-1.3
946,847	-	b0899	b0899	0.28	+0.0
946,849	-	b0899	b0899	0.28	+0.1
946,882	+	b0899	b0899	0.30	+0.4
946,887	+	b0899	b0899	0.30	-1.4
946,887	+	b0899	b0899	0.30	+3.5
946,897	+	b0899	b0899	0.31	-1.2
946,905	-	b0899	b0899	0.32	+0.9
946,905	-	b0899	b0899	0.32	+1.5
946,924	+	b0899	b0899	0.33	-1.4
946,939	+	b0899	b0899	0.34	-0.8
946,941	-	b0899	b0899	0.34	+3.7
946,956	+	b0899	b0899	0.35	+1.9
946,956	+	b0899	b0899	0.35	-1.0
946,956	+	b0899	b0899	0.35	+0.4
946,956	+	b0899	b0899	0.35	+0.3
946,956	+	b0899	b0899	0.35	+3.7
946,956	+	b0899	b0899	0.35	+0.2
946,956	+	b0899	b0899	0.35	-2.4
946,966	-	b0899	b0899	0.36	+1.2
946,966	-	b0899	b0899	0.36	+1.7
947,000	+	b0899	b0899	0.38	+0.5
947,054	-	b0899	b0899	0.42	+0.7
947,064	-	b0899	b0899	0.43	+1.2
947,068	+	b0899	b0899	0.43	-0.6
947,109	-	b0899	b0899	0.46	+2.7
947,109	-	b0899	b0899	0.46	+3.7
947,117	+	b0899	b0899	0.46	+0.8
947,168	+	b0899	b0899	0.50	-1.2
947,168	+	b0899	b0899	0.50	-1.4
947,184	-	b0899	b0899	0.51	+0.2
947,187	+	b0899	b0899	0.51	-1.6
947,197	+	b0899	b0899	0.52	+0.3
947,202	+	b0899	b0899	0.52	+0.2
947,202	+	b0899	b0899	0.52	-1.8
947,202	+	b0899	b0899	0.52	-1.9
947,202	+	b0899	b0899	0.52	-1.3
947,205	-	b0899	b0899	0.53	-0.6
947,212	+	b0899	b0899	0.53	-2.8
947,212	+	b0899	b0899	0.53	-0.3
947,220	-	b0899	b0899	0.54	+3.7
947,224	+	b0899	b0899	0.54	-1.7
947,224	+	b0899	b0899	0.54	-0.5
947,240	+	b0899	b0899	0.55	-1.7
947,276	+	b0899	b0899	0.58	-0.9
947,276	+	b0899	b0899	0.58	-0.7
947,286	+	b0899	b0899	0.58	-0.8
947,303	+	b0899	b0899	0.59	-0.0
947,303	+	b0899	b0899	0.59	-0.2
947,303	+	b0899	b0899	0.59	-0.7
947,303	+	b0899	b0899	0.59	-0.3
947,303	+	b0899	b0899	0.59	-0.2
947,306	+	b0899	b0899	0.60	+0.0
947,312	+	b0899	b0899	0.60	+0.0
947,323	+	b0899	b0899	0.61	-2.6
947,334	+	b0899	b0899	0.62	-1.9
947,347	+	b0899	b0899	0.63	-3.3
947,353	+	b0899	b0899	0.63	-0.3
947,353	+	b0899	b0899	0.63	+1.2
947,360	-	b0899	b0899	0.63	-0.8
947,361	-	b0899	b0899	0.64	+3.7
947,361	-	b0899	b0899	0.64	+3.7
947,367	-	b0899	b0899	0.64	+0.3
947,367	-	b0899	b0899	0.64	+3.7
947,375	+	b0899	b0899	0.65	+0.9
947,375	+	b0899	b0899	0.65	-0.6
947,378	+	b0899	b0899	0.65	-0.2
947,405	+	b0899	b0899	0.67	+0.3
947,413	+	b0899	b0899	0.67	+1.0
947,413	+	b0899	b0899	0.67	-1.2
947,418	+	b0899	b0899	0.68	-0.2
947,442	+	b0899	b0899	0.69	-1.9
947,451	-	b0899	b0899	0.70	+0.2
947,461	+	b0899	b0899	0.71	+0.1
947,472	+	b0899	b0899	0.71	-0.7
947,475	-	b0899	b0899	0.71	+3.7
947,494	+	b0899	b0899	0.73	-2.1
947,497	+	b0899	b0899	0.73	-0.6
947,498	+	b0899	b0899	0.73	-0.3
947,498	+	b0899	b0899	0.73	+1.9
947,515	+	b0899	b0899	0.74	-0.7
947,515	+	b0899	b0899	0.74	-0.5
947,530	+	b0899	b0899	0.75	-0.1
947,530	+	b0899	b0899	0.75	-2.2
947,534	+	b0899	b0899	0.76	-1.1
947,544	+	b0899	b0899	0.76	-2.9
947,558	+	b0899	b0899	0.77	-1.3
947,581	+	b0899	b0899	0.79	-0.2
947,701	-	b0899	b0899	0.87	-0.6
947,729	-	b0899	b0899	0.89	+1.4
947,729	-	b0899	b0899	0.89	+1.2
947,738	-	b0899	b0899	0.90	+0.0
947,740	+				-1.7
947,746	-				+1.7
947,748	-				+3.7
947,775	+				-0.6
947,776	+				-1.0
947,776	+				-0.4
947,781	-				-0.5
947,783	+				-0.4
947,783	-				-1.9
947,784	-				+2.2
947,787	+				-2.3
947,818	+				-0.7
947,833	+				-0.3
947,833	+				-1.9
947,833	+				+0.0
947,861	-				+0.9
947,895	+				-0.3
947,895	+				+0.2
947,899	+				+0.1
947,905	-				-1.4
947,916	-				+1.1
947,916	-				-0.5
947,916	-				+1.9
947,916	-				+1.6
947,942	-				-1.0
947,960	-				+2.1
947,966	-				-1.7
947,966	-				+0.5
947,967	-				+0.6
947,967	-				-0.5
947,967	-				-1.3
947,967	-				+0.4
947,967	-				+2.2
947,967	-				-0.8
948,002	+	ycaN	b0900	0.13	+1.7
948,007	+	ycaN	b0900	0.14	+2.2
948,023	-	ycaN	b0900	0.15	-0.8
948,023	-	ycaN	b0900	0.15	-0.9
948,025	-	ycaN	b0900	0.16	-0.7
948,025	-	ycaN	b0900	0.16	-0.6
948,026	-	ycaN	b0900	0.16	-2.1
948,028	-	ycaN	b0900	0.16	-2.5
948,043	+	ycaN	b0900	0.18	-2.2
948,043	+	ycaN	b0900	0.18	-1.1
948,051	-	ycaN	b0900	0.18	-0.2
948,051	-	ycaN	b0900	0.18	+0.4
948,051	-	ycaN	b0900	0.18	-1.4
948,051	-	ycaN	b0900	0.18	-0.3
948,051	-	ycaN	b0900	0.18	+0.9
948,055	+	ycaN	b0900	0.19	+3.7
948,062	-	ycaN	b0900	0.20	-0.6
948,065	+	ycaN	b0900	0.20	+0.1
948,067	+	ycaN	b0900	0.20	+1.6
948,070	-	ycaN	b0900	0.21	-0.7
948,070	-	ycaN	b0900	0.21	-0.3
948,074	-	ycaN	b0900	0.21	-0.8
948,080	-	ycaN	b0900	0.22	+0.1
948,082	-	ycaN	b0900	0.22	-1.3
948,094	-	ycaN	b0900	0.23	-0.1
948,094	-	ycaN	b0900	0.23	-1.2
948,094	-	ycaN	b0900	0.23	-0.5
948,096	+	ycaN	b0900	0.23	-2.7
948,106	+	ycaN	b0900	0.25	+0.7
948,110	+	ycaN	b0900	0.25	-1.0
948,162	-	ycaN	b0900	0.31	-2.4
948,172	-	ycaN	b0900	0.32	+0.4
948,244	-	ycaN	b0900	0.40	+0.2
948,244	-	ycaN	b0900	0.40	-0.5
948,256	+	ycaN	b0900	0.41	+2.0
948,256	+	ycaN	b0900	0.41	-2.5
948,258	+	ycaN	b0900	0.41	-1.8
948,295	-	ycaN	b0900	0.45	+2.2
948,320	-	ycaN	b0900	0.48	+0.4
948,349	+	ycaN	b0900	0.51	-1.8
948,412	-	ycaN	b0900	0.58	+3.7
948,471	+	ycaN	b0900	0.65	+1.1
948,485	+	ycaN	b0900	0.66	-0.2
948,501	+	ycaN	b0900	0.68	-0.2
948,504	-	ycaN	b0900	0.68	-0.0
948,545	+	ycaN	b0900	0.73	-0.1
948,546	+	ycaN	b0900	0.73	+1.2
948,565	-	ycaN	b0900	0.75	-0.7
948,616	+	ycaN	b0900	0.81	+1.7
948,616	+	ycaN	b0900	0.81	-0.3
948,616	+	ycaN	b0900	0.81	+0.9
948,632	-	ycaN	b0900	0.82	+0.0
948,673	+	ycaN	b0900	0.87	-0.7
948,702	+				+3.7
948,706	+				+1.7
948,707	+				+3.7
948,707	+				+0.9
948,707	+				+0.7
948,707	+				+1.4
948,708	+				+0.9
948,708	+				+1.6
948,708	+				+2.3
948,708	+				+2.7
948,714	+				+1.4
948,715	-				+0.1
948,715	-				+1.2
948,715	-				-0.2
948,715	-				+2.5
948,716	-				+2.2
948,716	-				+0.3
948,716	-				+1.7
948,716	-				+0.9
948,722	-				+2.2
948,722	-				-0.1
948,725	+				-0.4
948,752	+				+1.4
948,752	+				+1.4
948,773	+				+0.6
948,775	+				+2.5
948,837	+				-1.0
948,837	+				+0.3
948,837	+				+0.3
948,838	-				+2.7
948,839	+				-0.4
948,839	+				-1.0
948,845	-				+1.2
948,845	-				+0.2
948,850	+				-0.3
948,850	+				-0.9
948,851	+				-2.2
948,851	+				+0.1
948,852	+				+1.3
948,858	-				-1.5
948,863	+				-0.6
948,863	+				-0.2
948,863	+				-0.5
948,863	+				-1.9
948,863	+				-0.3
948,863	+				-1.1
948,863	+				-0.8
948,871	-				+2.7