Strain Fitness in Escherichia coli BW25113 around b0095

Experiment: vcDART vector transformation; liquid outgrowth assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntftsA and ftsZ are separated by 60 nucleotidesftsZ and lpxC are separated by 100 nucleotides b0094: ftsA - cell division protein (NCBI), at 103,982 to 105,244 ftsA b0095: ftsZ - cell division protein FtsZ (NCBI), at 105,305 to 106,456 ftsZ b0096: lpxC - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI), at 106,557 to 107,474 lpxC Position (kb) 105 106 107Strain fitness (log2 ratio) -1 0 1at 106.547 kb on + strandat 107.420 kb on + strandat 107.425 kb on + strandat 107.435 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction vcDART vector transformation; liquid outgrowth assay
remove
106,547 + +0.6
107,420 + -0.3
107,425 + +0.8
107,435 + +0.8

Or see this region's nucleotide sequence