Strain Fitness in Escherichia coli BW25113 around b0003

Experiment: vcDART vector transformation; liquid outgrowth assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	vcDART vector transformation; liquid outgrowth assay
1,868	+	thrA	b0002	0.62	-1.4
1,868	+	thrA	b0002	0.62	+0.3
1,871	+	thrA	b0002	0.62	-1.1
1,876	-	thrA	b0002	0.62	-1.3
1,881	-	thrA	b0002	0.63	-1.0
1,881	-	thrA	b0002	0.63	+1.4
1,929	+	thrA	b0002	0.65	-0.5
1,929	+	thrA	b0002	0.65	-0.4
1,937	-	thrA	b0002	0.65	-0.3
1,937	-	thrA	b0002	0.65	+1.5
2,076	+	thrA	b0002	0.71	+0.3
2,104	+	thrA	b0002	0.72	-0.1
2,104	+	thrA	b0002	0.72	-1.1
2,266	-	thrA	b0002	0.78	-0.9
2,266	-	thrA	b0002	0.78	-0.3
2,292	-	thrA	b0002	0.79	-2.4
2,294	+	thrA	b0002	0.79	+0.6
2,370	-	thrA	b0002	0.83	+0.9
2,370	-	thrA	b0002	0.83	+0.8
2,449	-	thrA	b0002	0.86	+0.1
2,590	-				+1.6
2,675	+				+0.5
2,682	+				+0.1
2,682	+				+4.1
2,684	+				+0.8
2,717	+				-0.5
2,744	-				-0.1
2,787	-				-0.7
2,787	-				+0.4
2,829	+				-2.2
2,847	+				+0.2
2,847	+				-1.4
2,906	-	thrB	b0003	0.11	+0.7
2,934	+	thrB	b0003	0.14	-0.5
2,963	-	thrB	b0003	0.17	+0.1
3,020	-	thrB	b0003	0.23	-2.6
3,023	+	thrB	b0003	0.24	-0.5
3,131	+	thrB	b0003	0.35	-0.6
3,144	-	thrB	b0003	0.37	-0.2
3,186	+	thrB	b0003	0.41	-1.5
3,246	+	thrB	b0003	0.48	+0.5
3,248	+	thrB	b0003	0.48	+0.4
3,256	+	thrB	b0003	0.49	+1.0
3,293	+	thrB	b0003	0.53	+1.6
3,301	-	thrB	b0003	0.54	+1.0
3,318	-	thrB	b0003	0.55	+0.2
3,411	+	thrB	b0003	0.65	-1.3
3,444	-	thrB	b0003	0.69	-1.7
3,444	-	thrB	b0003	0.69	-1.5
3,504	-	thrB	b0003	0.75	-1.1
3,504	-	thrB	b0003	0.75	+0.6
3,509	-	thrB	b0003	0.76	-0.3
3,511	+	thrB	b0003	0.76	+0.0
3,607	+	thrB	b0003	0.86	+0.7
3,634	-	thrB	b0003	0.89	-1.6
3,638	+	thrB	b0003	0.90	+0.5
3,638	+	thrB	b0003	0.90	-0.4
3,650	+				-0.2
3,769	+				-1.1
3,769	+				-1.0
3,792	-				+0.1
3,805	-				+1.0
3,953	-	thrC	b0004	0.17	-0.7
3,953	-	thrC	b0004	0.17	-0.5
4,108	-	thrC	b0004	0.29	+0.0
4,174	-	thrC	b0004	0.34	-0.2
4,180	+	thrC	b0004	0.35	+0.8
4,180	+	thrC	b0004	0.35	-1.2
4,216	+	thrC	b0004	0.37	-0.9
4,253	-	thrC	b0004	0.40	-2.2
4,253	-	thrC	b0004	0.40	-0.7
4,464	-	thrC	b0004	0.57	-0.3
4,466	+	thrC	b0004	0.57	+1.1
4,619	+	thrC	b0004	0.69	+0.2
4,721	+	thrC	b0004	0.77	+1.1
4,729	+	thrC	b0004	0.77	-0.6
4,729	-	thrC	b0004	0.77	-0.1
4,729	-	thrC	b0004	0.77	-0.6