Strain Fitness in Escherichia coli BW25113 around b4303

Experiment: vcDART vector transformation; liquid outgrowth assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	vcDART vector transformation; liquid outgrowth assay
4,525,167	-	sgcE	b4301	0.38	-1.3
4,525,217	-	sgcE	b4301	0.46	-3.5
4,525,220	+	sgcE	b4301	0.46	+0.3
4,525,220	+	sgcE	b4301	0.46	-0.3
4,525,290	-	sgcE	b4301	0.57	-1.2
4,525,315	-	sgcE	b4301	0.61	-1.8
4,525,315	-	sgcE	b4301	0.61	-1.6
4,525,363	+	sgcE	b4301	0.69	+1.1
4,525,462	+	sgcE	b4301	0.84	-0.7
4,525,492	+	sgcE	b4301	0.89	-1.8
4,525,492	+	sgcE	b4301	0.89	-0.5
4,525,519	+				-0.9
4,525,549	+				+2.3
4,525,559	+				-0.7
4,525,565	-				-0.5
4,525,632	-	sgcA	b4302	0.14	-2.1
4,525,632	-	sgcA	b4302	0.14	-2.9
4,525,650	+	sgcA	b4302	0.18	-1.2
4,525,663	-	sgcA	b4302	0.21	-1.6
4,525,756	+	sgcA	b4302	0.43	-1.9
4,525,761	+	sgcA	b4302	0.44	-0.1
4,525,805	-	sgcA	b4302	0.54	-2.7
4,525,805	-	sgcA	b4302	0.54	-0.8
4,525,844	+	sgcA	b4302	0.63	-1.3
4,525,888	+	sgcA	b4302	0.73	+0.8
4,525,888	+	sgcA	b4302	0.73	-0.5
4,525,896	+	sgcA	b4302	0.75	+0.7
4,525,896	+	sgcA	b4302	0.75	+0.3
4,525,914	+	sgcA	b4302	0.79	+0.8
4,525,971	-				+0.4
4,526,051	+	ryjB	b4624	0.57	-0.1
4,526,140	+				+0.7
4,526,140	+				+0.4
4,526,140	+				-1.7
4,526,164	+				-1.9
4,526,174	+				+0.3
4,526,174	+				-0.2
4,526,254	+	sgcQ	b4303	0.15	+0.1
4,526,254	+	sgcQ	b4303	0.15	-0.2
4,526,257	+	sgcQ	b4303	0.15	+0.7
4,526,298	+	sgcQ	b4303	0.20	-2.1
4,526,338	-				-0.4
4,526,356	+	sgcQ	b4303	0.28	-1.2
4,526,356	+	sgcQ	b4303	0.28	-0.5
4,526,388	+	sgcQ	b4303	0.31	-0.2
4,526,448	+	sgcQ	b4303	0.39	-0.3
4,526,448	+	sgcQ	b4303	0.39	+0.6
4,526,460	+	sgcQ	b4303	0.40	-0.3
4,526,461	+	sgcQ	b4303	0.41	-0.2
4,526,468	-	sgcQ	b4303	0.41	-0.9
4,526,468	-	sgcQ	b4303	0.41	-0.3
4,526,583	-	sgcQ	b4303	0.56	+0.4
4,526,621	-	sgcQ	b4303	0.60	-1.0
4,526,738	+	sgcQ	b4303	0.75	+0.5
4,526,769	-	sgcQ	b4303	0.79	-1.4
4,526,774	+	sgcQ	b4303	0.79	-1.3
4,526,809	+	sgcQ	b4303	0.84	-0.4
4,526,874	+				-1.5
4,526,885	-				-1.2
4,526,885	-				-0.4
4,526,895	-				-1.2
4,526,975	+				-1.8
4,526,975	+				-0.1
4,526,993	-				-3.1
4,526,993	-				-1.0
4,527,227	-	sgcC	b4304	0.21	-2.4
4,527,239	+	sgcC	b4304	0.22	+0.0
4,527,350	-	sgcC	b4304	0.30	-0.3
4,527,357	-	sgcC	b4304	0.31	-2.3
4,527,357	-	sgcC	b4304	0.31	-0.4
4,527,373	+	sgcC	b4304	0.32	-0.8
4,527,381	+	sgcC	b4304	0.33	-0.9
4,527,381	+	sgcC	b4304	0.33	-2.7
4,527,390	+	sgcC	b4304	0.33	-2.8
4,527,400	+	sgcC	b4304	0.34	-1.2
4,527,406	-	sgcC	b4304	0.34	-2.3
4,527,441	+	sgcC	b4304	0.37	-1.2
4,527,441	+	sgcC	b4304	0.37	+0.4
4,527,504	+	sgcC	b4304	0.42	-1.6
4,527,642	+	sgcC	b4304	0.52	-1.4
4,527,648	-	sgcC	b4304	0.53	-1.6
4,527,702	+	sgcC	b4304	0.57	-0.1
4,527,702	+	sgcC	b4304	0.57	-3.2
4,527,752	-	sgcC	b4304	0.61	-0.3
4,527,850	-	sgcC	b4304	0.68	-2.6
4,527,875	+	sgcC	b4304	0.70	-0.4
4,527,875	+	sgcC	b4304	0.70	-2.4
4,527,940	+	sgcC	b4304	0.75	-0.1