Strain Fitness in Escherichia coli BW25113 around b1339

Experiment: vcDART vector transformation; liquid outgrowth assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	vcDART vector transformation; liquid outgrowth assay
1,401,801	-	ydaJ	b1338	0.40	-0.8
1,401,801	-	ydaJ	b1338	0.40	-2.6
1,401,885	-	ydaJ	b1338	0.46	-1.2
1,401,932	+	ydaJ	b1338	0.50	-1.9
1,401,932	+	ydaJ	b1338	0.50	-0.7
1,402,102	-	ydaJ	b1338	0.63	-1.3
1,402,102	-	ydaJ	b1338	0.63	-0.2
1,402,268	-	ydaJ	b1338	0.75	-0.4
1,402,450	-	ydaJ	b1338	0.89	-0.5
1,402,513	+				+0.7
1,402,592	-				-0.1
1,402,592	-				-0.0
1,402,834	-				-1.3
1,402,988	+	abgR	b1339	0.25	-1.2
1,403,075	+	abgR	b1339	0.34	+0.6
1,403,075	+	abgR	b1339	0.34	-1.4
1,403,087	+	abgR	b1339	0.35	-1.1
1,403,087	+	abgR	b1339	0.35	-0.2
1,403,109	-	abgR	b1339	0.38	-2.6
1,403,119	-	abgR	b1339	0.39	-1.4
1,403,119	-	abgR	b1339	0.39	-0.8
1,403,153	-	abgR	b1339	0.43	+0.2
1,403,153	-	abgR	b1339	0.43	-0.9
1,403,464	-	abgR	b1339	0.77	-0.7
1,403,464	-	abgR	b1339	0.77	-0.6
1,403,519	-	abgR	b1339	0.83	-0.8
1,403,519	-	abgR	b1339	0.83	-0.6
1,403,720	+	isrA	b4426	0.28	+0.1
1,403,720	+	isrA	b4426	0.28	-0.8
1,403,732	-	isrA	b4426	0.35	+2.4
1,403,735	-	isrA	b4426	0.37	+1.0
1,404,417	-	ydaL	b1340	0.73	-0.6
1,404,648	+				+0.2
1,404,666	-				-0.0