Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4924 and PP_4925 overlap by 4 nucleotides PP_4925 and PP_4926 are separated by 240 nucleotides
PP_4924: PP_4924 - Serine protease, subtilase family, at 5,598,064 to 5,603,481
_4924
PP_4925: PP_4925 - conserved protein of unknown function, at 5,603,478 to 5,604,287
_4925
PP_4926: PP_4926 - HlyD family secretion protein, at 5,604,528 to 5,605,946
_4926
Position (kb) 5603
5604
5605 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5602.504 kb on + strand, within PP_4924 at 5602.504 kb on + strand, within PP_4924 at 5602.505 kb on - strand, within PP_4924 at 5602.505 kb on - strand, within PP_4924 at 5602.553 kb on + strand, within PP_4924 at 5602.554 kb on - strand, within PP_4924 at 5602.852 kb on - strand, within PP_4924 at 5602.890 kb on + strand, within PP_4924 at 5602.891 kb on - strand, within PP_4924 at 5602.891 kb on - strand, within PP_4924 at 5602.969 kb on + strand at 5603.408 kb on + strand at 5603.408 kb on + strand at 5603.428 kb on - strand at 5603.428 kb on - strand at 5603.541 kb on - strand at 5603.629 kb on + strand, within PP_4925 at 5603.668 kb on + strand, within PP_4925 at 5603.788 kb on - strand, within PP_4925 at 5603.812 kb on + strand, within PP_4925 at 5603.875 kb on - strand, within PP_4925 at 5603.888 kb on + strand, within PP_4925 at 5603.909 kb on - strand, within PP_4925 at 5603.947 kb on + strand, within PP_4925 at 5603.948 kb on - strand, within PP_4925 at 5604.266 kb on + strand at 5604.272 kb on + strand at 5604.278 kb on + strand at 5604.460 kb on - strand at 5604.498 kb on - strand at 5604.501 kb on + strand at 5604.501 kb on + strand at 5604.518 kb on + strand at 5604.587 kb on + strand at 5604.700 kb on + strand, within PP_4926 at 5604.717 kb on - strand, within PP_4926 at 5604.772 kb on + strand, within PP_4926 at 5604.779 kb on + strand, within PP_4926 at 5604.779 kb on + strand, within PP_4926 at 5604.836 kb on + strand, within PP_4926 at 5604.914 kb on + strand, within PP_4926 at 5604.933 kb on - strand, within PP_4926 at 5604.978 kb on + strand, within PP_4926 at 5604.979 kb on - strand, within PP_4926 at 5605.204 kb on + strand, within PP_4926 at 5605.204 kb on + strand, within PP_4926 at 5605.204 kb on + strand, within PP_4926 at 5605.204 kb on + strand, within PP_4926 at 5605.205 kb on - strand, within PP_4926 at 5605.205 kb on - strand, within PP_4926
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,602,504 + PP_4924 0.82 +0.1 5,602,504 + PP_4924 0.82 +2.0 5,602,505 - PP_4924 0.82 -0.0 5,602,505 - PP_4924 0.82 -2.0 5,602,553 + PP_4924 0.83 -0.3 5,602,554 - PP_4924 0.83 +1.1 5,602,852 - PP_4924 0.88 +1.3 5,602,890 + PP_4924 0.89 -1.2 5,602,891 - PP_4924 0.89 -1.3 5,602,891 - PP_4924 0.89 -0.8 5,602,969 + +2.1 5,603,408 + +0.1 5,603,408 + +0.5 5,603,428 - +1.3 5,603,428 - -1.7 5,603,541 - +0.1 5,603,629 + PP_4925 0.19 -0.7 5,603,668 + PP_4925 0.23 +4.7 5,603,788 - PP_4925 0.38 +0.7 5,603,812 + PP_4925 0.41 +0.4 5,603,875 - PP_4925 0.49 -0.6 5,603,888 + PP_4925 0.51 +1.5 5,603,909 - PP_4925 0.53 +0.1 5,603,947 + PP_4925 0.58 -0.1 5,603,948 - PP_4925 0.58 -1.1 5,604,266 + +0.0 5,604,272 + -0.5 5,604,278 + +0.5 5,604,460 - -0.3 5,604,498 - +0.1 5,604,501 + +2.0 5,604,501 + +0.3 5,604,518 + -0.5 5,604,587 + +2.0 5,604,700 + PP_4926 0.12 +0.4 5,604,717 - PP_4926 0.13 -1.9 5,604,772 + PP_4926 0.17 -1.1 5,604,779 + PP_4926 0.18 -2.1 5,604,779 + PP_4926 0.18 -0.4 5,604,836 + PP_4926 0.22 +0.1 5,604,914 + PP_4926 0.27 -0.5 5,604,933 - PP_4926 0.29 -0.4 5,604,978 + PP_4926 0.32 -0.1 5,604,979 - PP_4926 0.32 +2.8 5,605,204 + PP_4926 0.48 +0.5 5,605,204 + PP_4926 0.48 +0.4 5,605,204 + PP_4926 0.48 +0.2 5,605,204 + PP_4926 0.48 +0.9 5,605,205 - PP_4926 0.48 -2.1 5,605,205 - PP_4926 0.48 -1.1
Or see this region's nucleotide sequence