Strain Fitness in Pseudomonas putida KT2440 around PP_2849

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2847 and PP_2848 overlap by 1 nucleotidesPP_2848 and PP_2849 are separated by 11 nucleotidesPP_2849 and PP_2851 are separated by 242 nucleotides PP_2847: PP_2847 - Urease accessory protein UreJ, at 3,250,616 to 3,251,161 _2847 PP_2848: PP_2848 - urease accessory protein, at 3,251,161 to 3,251,835 _2848 PP_2849: PP_2849 - urease accessory protein, at 3,251,847 to 3,252,470 _2849 PP_2851: PP_2851 - conserved protein of unknown function, at 3,252,713 to 3,253,441 _2851 Position (kb) 3251 3252 3253Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3250.990 kb on - strand, within PP_2847at 3250.990 kb on - strand, within PP_2847at 3251.229 kb on + strand, within PP_2848at 3251.230 kb on - strand, within PP_2848at 3251.362 kb on + strand, within PP_2848at 3251.379 kb on + strandat 3251.813 kb on - strandat 3251.813 kb on - strandat 3251.813 kb on - strandat 3251.856 kb on + strandat 3251.857 kb on - strandat 3251.979 kb on + strand, within PP_2849at 3251.979 kb on + strand, within PP_2849at 3251.979 kb on + strandat 3251.980 kb on - strand, within PP_2849at 3251.980 kb on - strand, within PP_2849at 3252.318 kb on + strand, within PP_2849at 3252.318 kb on + strand, within PP_2849at 3252.318 kb on + strand, within PP_2849at 3252.319 kb on - strand, within PP_2849at 3252.319 kb on - strand, within PP_2849at 3252.319 kb on - strand, within PP_2849at 3252.319 kb on - strand, within PP_2849at 3252.323 kb on - strand, within PP_2849at 3252.562 kb on + strandat 3252.753 kb on + strandat 3252.829 kb on - strand, within PP_2851at 3252.829 kb on - strand, within PP_2851at 3252.870 kb on + strand, within PP_2851at 3252.871 kb on - strand, within PP_2851at 3252.871 kb on - strand, within PP_2851at 3252.879 kb on + strand, within PP_2851at 3252.879 kb on + strand, within PP_2851at 3252.880 kb on - strand, within PP_2851at 3252.880 kb on - strand, within PP_2851at 3252.945 kb on + strand, within PP_2851at 3252.945 kb on + strand, within PP_2851at 3252.954 kb on + strand, within PP_2851at 3252.954 kb on + strand, within PP_2851at 3252.954 kb on + strand, within PP_2851at 3252.955 kb on - strand, within PP_2851at 3252.955 kb on - strand, within PP_2851at 3252.955 kb on - strand, within PP_2851at 3252.955 kb on - strand, within PP_2851at 3252.961 kb on - strand, within PP_2851at 3253.029 kb on + strand, within PP_2851at 3253.080 kb on + strand, within PP_2851at 3253.147 kb on - strand, within PP_2851at 3253.213 kb on - strand, within PP_2851

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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3,250,990 - PP_2847 0.68 -0.6
3,250,990 - PP_2847 0.68 -0.8
3,251,229 + PP_2848 0.10 +3.9
3,251,230 - PP_2848 0.10 -0.8
3,251,362 + PP_2848 0.30 +0.6
3,251,379 + +1.0
3,251,813 - +0.7
3,251,813 - +2.5
3,251,813 - +0.5
3,251,856 + +0.2
3,251,857 - +0.3
3,251,979 + PP_2849 0.21 +0.1
3,251,979 + PP_2849 0.21 -1.1
3,251,979 + +0.6
3,251,980 - PP_2849 0.21 +1.5
3,251,980 - PP_2849 0.21 -0.2
3,252,318 + PP_2849 0.75 +0.7
3,252,318 + PP_2849 0.75 +0.3
3,252,318 + PP_2849 0.75 -0.9
3,252,319 - PP_2849 0.76 -0.1
3,252,319 - PP_2849 0.76 +0.4
3,252,319 - PP_2849 0.76 -0.5
3,252,319 - PP_2849 0.76 -1.4
3,252,323 - PP_2849 0.76 -0.0
3,252,562 + -0.7
3,252,753 + +2.0
3,252,829 - PP_2851 0.16 +1.7
3,252,829 - PP_2851 0.16 -1.9
3,252,870 + PP_2851 0.22 +1.5
3,252,871 - PP_2851 0.22 +0.7
3,252,871 - PP_2851 0.22 +1.8
3,252,879 + PP_2851 0.23 +0.3
3,252,879 + PP_2851 0.23 +0.1
3,252,880 - PP_2851 0.23 +0.7
3,252,880 - PP_2851 0.23 -0.5
3,252,945 + PP_2851 0.32 +1.2
3,252,945 + PP_2851 0.32 +0.9
3,252,954 + PP_2851 0.33 +0.4
3,252,954 + PP_2851 0.33 -0.3
3,252,954 + PP_2851 0.33 -0.4
3,252,955 - PP_2851 0.33 +1.0
3,252,955 - PP_2851 0.33 +1.0
3,252,955 - PP_2851 0.33 +0.7
3,252,955 - PP_2851 0.33 -0.1
3,252,961 - PP_2851 0.34 +0.8
3,253,029 + PP_2851 0.43 -0.8
3,253,080 + PP_2851 0.50 -0.1
3,253,147 - PP_2851 0.60 -0.9
3,253,213 - PP_2851 0.69 +0.3

Or see this region's nucleotide sequence