Strain Fitness in Pseudomonas putida KT2440 around PP_5463

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
1,274,130	+				+0.2
1,274,131	-				-0.6
1,274,158	+				+0.0
1,274,164	+				+1.4
1,274,164	+				-0.5
1,274,164	+				-2.2
1,274,164	+				+0.6
1,274,165	-				-0.9
1,274,181	+				-0.2
1,274,181	+				-1.7
1,274,201	+				-1.1
1,274,202	-				-0.4
1,274,243	-				+0.0
1,274,250	-				-2.4
1,274,250	-				+2.2
1,274,250	-				-0.4
1,274,250	-				-0.2
1,274,320	+				+1.0
1,274,321	-				-0.4
1,274,321	-				+0.1
1,274,349	-				+1.6
1,274,349	-				+1.2
1,274,378	+				+1.3
1,274,379	-				+0.1
1,274,402	-				-0.9
1,274,443	+				+0.5
1,274,470	+				-1.1
1,274,534	-				-0.7
1,274,549	+				-0.4
1,274,549	+				+0.7
1,274,591	+		PP_5462	0.10	+4.1
1,274,591	+		PP_5462	0.10	+0.0
1,274,591	+				+1.9
1,274,592	-		PP_5462	0.11	+1.5
1,274,592	-		PP_5462	0.11	+0.5
1,274,592	-		PP_5462	0.11	+0.7
1,274,627	+		PP_5462	0.25	-0.7
1,274,628	-		PP_5462	0.26	-1.3
1,274,697	+		PP_5462	0.55	+0.3
1,274,730	+		PP_5462	0.69	+0.5
1,274,730	+		PP_5462	0.69	+0.2
1,274,731	-		PP_5462	0.69	+0.8
1,274,731	-		PP_5462	0.69	+0.0
1,274,731	-		PP_5462	0.69	-1.7
1,274,737	+		PP_5462	0.72	+1.7
1,274,737	+		PP_5462	0.72	-0.2
1,274,737	+		PP_5462	0.72	+2.0
1,274,738	-		PP_5462	0.72	+0.5
1,274,738	-		PP_5462	0.72	-0.4
1,274,738	-		PP_5462	0.72	-1.6
1,274,765	+		PP_5462	0.84	-0.1
1,274,828	+				-0.3
1,274,828	+				-1.2
1,274,829	-				+0.8
1,274,829	-				+1.5
1,274,829	-				+2.3
1,274,832	+				-0.4
1,274,833	-				-1.1
1,274,833	-				-2.0
1,274,833	-				-1.2
1,274,835	+				+0.0
1,274,835	+				-0.2
1,274,836	-				+1.1
1,274,844	+				+0.1
1,274,844	+				+0.0
1,274,844	+				+1.1
1,274,845	-				+0.4
1,274,845	-				+0.3
1,274,960	+				-0.1
1,275,013	+				+1.4
1,275,014	-				+0.1
1,275,031	+				+0.7
1,275,052	+				+0.6
1,275,052	+				+0.5
1,275,052	+				-1.1
1,275,052	+				+0.4
1,275,053	-				+2.7
1,275,116	+				-0.5
1,275,117	-				+1.5
1,275,121	+				-1.1
1,275,122	-				-0.9
1,275,124	+				-0.8
1,275,124	+				+0.7
1,275,218	+		PP_5463	0.18	-0.9
1,275,242	+		PP_5463	0.23	+0.1
1,275,243	-		PP_5463	0.23	+0.6
1,275,250	+		PP_5463	0.24	+0.8
1,275,251	-		PP_5463	0.24	-0.4
1,275,265	+		PP_5463	0.27	+2.1
1,275,265	+		PP_5463	0.27	-2.0
1,275,266	-		PP_5463	0.27	+0.1
1,275,266	-		PP_5463	0.27	-0.6
1,275,266	-		PP_5463	0.27	+0.8
1,275,267	+		PP_5463	0.27	-1.0
1,275,268	-		PP_5463	0.27	-1.2
1,275,268	-		PP_5463	0.27	+2.2
1,275,305	-		PP_5463	0.34	+1.9
1,275,310	+		PP_5463	0.35	+0.2
1,275,310	+		PP_5463	0.35	+3.6
1,275,311	-		PP_5463	0.35	-0.8
1,275,358	+		PP_5463	0.43	+0.4
1,275,358	+		PP_5463	0.43	+0.9
1,275,359	-		PP_5463	0.43	-1.1
1,275,359	-				+0.9
1,275,423	-		PP_5463	0.55	+2.5
1,275,427	-		PP_5463	0.56	+0.4
1,275,427	-		PP_5463	0.56	+1.2
1,275,462	+		PP_5463	0.62	-2.5
1,275,463	-		PP_5463	0.62	-0.1
1,275,471	-		PP_5463	0.63	+0.7
1,275,474	+		PP_5463	0.64	-1.3
1,275,474	+		PP_5463	0.64	+0.8
1,275,498	-		PP_5463	0.68	+0.8
1,275,498	-		PP_5463	0.68	-1.0
1,275,501	+		PP_5463	0.69	+0.5
1,275,502	-		PP_5463	0.69	+0.2
1,275,516	+		PP_5463	0.71	+0.6
1,275,560	-		PP_5463	0.79	+1.2
1,275,597	+		PP_5463	0.86	+0.6
1,275,597	+		PP_5463	0.86	-0.6
1,275,598	-		PP_5463	0.86	-1.0
1,275,598	-		PP_5463	0.86	+0.5
1,275,626	+				-1.7
1,275,703	+				+0.4
1,275,703	+				-1.0
1,275,813	+				+1.0
1,275,814	-				+0.0
1,275,814	-				-1.7
1,275,814	-				+0.6
1,275,903	-				-0.5
1,275,927	-				-2.1
1,275,947	+				-0.1
1,275,966	+				-0.8
1,275,994	+				-1.8
1,275,994	+				-1.0
1,275,994	+				-0.1
1,275,994	+				+1.1
1,275,995	-				-0.9
1,276,079	+		PP_5464	0.14	-0.4
1,276,079	+		PP_5464	0.14	-1.1
1,276,079	+		PP_5464	0.14	+2.1
1,276,080	-		PP_5464	0.14	+0.5
1,276,080	-				+1.9
1,276,099	+		PP_5464	0.19	+1.6
1,276,099	+		PP_5464	0.19	+0.3
1,276,099	+		PP_5464	0.19	-0.4
1,276,100	-		PP_5464	0.19	-1.3
1,276,100	-		PP_5464	0.19	-0.9
1,276,100	-		PP_5464	0.19	+1.5
1,276,148	+		PP_5464	0.30	-0.1
1,276,148	+		PP_5464	0.30	-1.3
1,276,148	+		PP_5464	0.30	+1.5
1,276,155	+		PP_5464	0.32	+0.6
1,276,197	+		PP_5464	0.41	+0.3
1,276,197	+		PP_5464	0.41	+0.0
1,276,197	+		PP_5464	0.41	+0.9
1,276,198	-		PP_5464	0.41	-1.0
1,276,198	-		PP_5464	0.41	+0.0
1,276,198	-		PP_5464	0.41	+0.3
1,276,198	-		PP_5464	0.41	+0.2
1,276,198	-		PP_5464	0.41	+0.4
1,276,198	-		PP_5464	0.41	+1.5
1,276,212	+		PP_5464	0.45	-1.3
1,276,213	-		PP_5464	0.45	+0.7
1,276,270	-		PP_5464	0.58	+0.8
1,276,308	+		PP_5464	0.66	+0.1
1,276,308	+		PP_5464	0.66	+0.5
1,276,309	-		PP_5464	0.67	+0.4
1,276,345	-		PP_5464	0.75	-0.5
1,276,366	+		PP_5464	0.80	-0.3
1,276,377	+		PP_5464	0.82	+1.2
1,276,377	+		PP_5464	0.82	+0.4
1,276,378	-		PP_5464	0.82	-0.8
1,276,408	+		PP_5464	0.89	+1.0
1,276,409	-		PP_5464	0.89	-0.5
1,276,428	+				-1.4
1,276,429	-				-0.6
1,276,518	-				-0.2
1,276,518	-				+0.5
1,276,544	-				+0.7
1,276,585	+				+0.2
1,276,586	-				+0.2
1,276,586	-				-0.6
1,276,598	-				-0.3
1,276,638	+				+1.8
1,276,639	-				+0.0
1,276,648	-				-0.8
1,276,651	-				-0.5
1,276,651	-				+0.4
1,276,660	+				+0.3
1,276,660	+				-0.1
1,276,660	+				-1.0
1,276,660	+				+0.4
1,276,661	-				+1.0
1,276,661	-				-0.2
1,276,661	-				+0.2