Strain Fitness in Pseudomonas putida KT2440 around PP_3845

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,367,132	+		PP_3844	0.19	+0.3
4,367,141	-		PP_3844	0.20	+0.1
4,367,141	-		PP_3844	0.20	+1.0
4,367,258	+		PP_3844	0.30	-1.0
4,367,259	-				+0.3
4,367,304	+		PP_3844	0.34	+0.0
4,367,304	+		PP_3844	0.34	+0.8
4,367,304	+		PP_3844	0.34	-0.4
4,367,305	-		PP_3844	0.34	-0.7
4,367,368	+		PP_3844	0.40	+1.9
4,367,368	+		PP_3844	0.40	-0.1
4,367,369	-		PP_3844	0.40	+1.9
4,367,369	-		PP_3844	0.40	-0.4
4,367,463	-		PP_3844	0.48	+0.2
4,367,463	-		PP_3844	0.48	-0.6
4,367,463	-		PP_3844	0.48	-0.2
4,367,560	-		PP_3844	0.57	-2.0
4,367,560	-		PP_3844	0.57	+0.2
4,367,567	+		PP_3844	0.58	+0.2
4,367,567	+		PP_3844	0.58	+0.6
4,367,567	+		PP_3844	0.58	-1.4
4,367,567	+		PP_3844	0.58	+0.9
4,367,568	-		PP_3844	0.58	+0.5
4,367,568	-		PP_3844	0.58	-0.5
4,367,635	+		PP_3844	0.64	+1.1
4,367,635	+		PP_3844	0.64	+0.3
4,367,635	+		PP_3844	0.64	-0.2
4,367,636	-		PP_3844	0.64	-1.7
4,367,665	+		PP_3844	0.66	+0.2
4,367,669	+		PP_3844	0.67	+1.2
4,367,669	+		PP_3844	0.67	+1.1
4,367,669	+		PP_3844	0.67	+2.2
4,367,669	+		PP_3844	0.67	+1.2
4,367,887	-		PP_3844	0.86	-0.2
4,368,008	+				+2.8
4,368,009	-				-0.3
4,368,122	+				+0.3
4,368,226	-				+0.3
4,368,227	+				-0.0
4,368,227	+				+0.9
4,368,227	+				+0.1
4,368,228	-				-0.0
4,368,230	-				-0.8
4,368,230	-				+0.3
4,368,230	-				+1.4
4,368,230	-				-0.8
4,368,230	-				-1.7
4,368,259	+		PP_3845	0.12	-0.2
4,368,259	+		PP_3845	0.12	+1.0
4,368,260	-		PP_3845	0.13	+0.8
4,368,260	-		PP_3845	0.13	-0.9
4,368,293	+		PP_3845	0.15	-2.7
4,368,302	+		PP_3845	0.16	+0.2
4,368,302	+		PP_3845	0.16	+1.6
4,368,302	+				+2.5
4,368,303	-		PP_3845	0.16	+0.4
4,368,303	-		PP_3845	0.16	+5.5
4,368,341	+		PP_3845	0.20	-1.3
4,368,341	+		PP_3845	0.20	-1.1
4,368,341	+		PP_3845	0.20	+0.4
4,368,341	+		PP_3845	0.20	+0.1
4,368,341	+		PP_3845	0.20	+0.2
4,368,341	+		PP_3845	0.20	+0.0
4,368,341	+		PP_3845	0.20	-1.3
4,368,342	-		PP_3845	0.20	-2.5
4,368,342	-				-0.1
4,368,397	-		PP_3845	0.25	-0.1
4,368,437	+		PP_3845	0.28	+0.5
4,368,437	+		PP_3845	0.28	-0.7
4,368,438	-		PP_3845	0.29	-1.8
4,368,438	-		PP_3845	0.29	+0.4
4,368,438	-		PP_3845	0.29	-1.7
4,368,567	-		PP_3845	0.40	-0.1
4,368,573	+		PP_3845	0.41	-0.1
4,368,583	+		PP_3845	0.42	-0.0
4,368,583	+		PP_3845	0.42	-0.0
4,368,614	+		PP_3845	0.44	+1.3
4,368,627	+		PP_3845	0.46	-1.6
4,368,638	+		PP_3845	0.47	-0.7
4,368,638	+		PP_3845	0.47	-1.1
4,368,638	+		PP_3845	0.47	+0.7
4,368,638	+		PP_3845	0.47	-1.8
4,368,639	-		PP_3845	0.47	-0.6
4,368,639	-		PP_3845	0.47	+0.7
4,368,653	+		PP_3845	0.48	-0.7
4,368,653	+		PP_3845	0.48	+3.1
4,368,672	+		PP_3845	0.50	-1.4
4,368,673	-		PP_3845	0.50	-0.5
4,368,781	+		PP_3845	0.59	+0.5
4,368,789	+		PP_3845	0.60	-0.7
4,368,789	+		PP_3845	0.60	-0.2
4,368,789	+		PP_3845	0.60	+0.8
4,368,789	+		PP_3845	0.60	+0.7
4,368,790	-		PP_3845	0.60	-0.5
4,368,790	-		PP_3845	0.60	-0.3
4,368,790	-		PP_3845	0.60	-0.8
4,368,790	-		PP_3845	0.60	-0.4
4,368,790	-		PP_3845	0.60	+0.8
4,368,833	+		PP_3845	0.64	-0.2
4,368,834	-		PP_3845	0.64	-0.8
4,368,846	-		PP_3845	0.65	+0.5
4,368,965	-		PP_3845	0.76	+0.5
4,368,965	-		PP_3845	0.76	+0.5
4,369,055	+		PP_3845	0.84	+1.2
4,369,055	+		PP_3845	0.84	-1.3
4,369,056	-		PP_3845	0.84	+0.6
4,369,056	-		PP_3845	0.84	+0.0
4,369,112	+		PP_3845	0.89	+0.3
4,369,112	+		PP_3845	0.89	-1.3
4,369,112	+		PP_3845	0.89	-0.1
4,369,112	+		PP_3845	0.89	+0.5
4,369,113	-		PP_3845	0.89	-0.4
4,369,113	-		PP_3845	0.89	-0.1
4,369,113	-		PP_3845	0.89	+1.6
4,369,113	-		PP_3845	0.89	-0.9
4,369,118	+		PP_3845	0.90	-0.2
4,369,127	+				-2.4
4,369,127	+				+0.0
4,369,127	+				-0.4
4,369,127	+				-0.2
4,369,127	+				+0.9
4,369,127	+				+0.5
4,369,127	+				+0.9
4,369,127	+				+0.7
4,369,128	-				-0.7
4,369,128	-				-0.1
4,369,128	-				+0.7
4,369,132	-				+0.5
4,369,214	+				+0.1
4,369,215	-				+0.8
4,369,285	+				+1.0
4,369,285	+				+0.3
4,369,286	-				-0.2
4,369,297	+				+0.2
4,369,297	+				-0.0
4,369,297	+				-0.9
4,369,298	-				+0.0
4,369,327	-				-0.4
4,369,456	+		PP_3846	0.10	+0.4
4,369,456	+		PP_3846	0.10	+2.7
4,369,457	-		PP_3846	0.11	+0.4
4,369,492	-		PP_3846	0.15	+0.1
4,369,698	-		PP_3846	0.40	+0.7
4,369,707	+		PP_3846	0.41	-0.7
4,369,707	+		PP_3846	0.41	+0.5
4,369,708	-		PP_3846	0.41	+0.7
4,369,708	-		PP_3846	0.41	+1.0
4,369,708	-		PP_3846	0.41	+0.9
4,369,765	+		PP_3846	0.48	+2.2
4,369,766	-		PP_3846	0.48	+0.2
4,369,766	-		PP_3846	0.48	-0.2
4,369,813	+		PP_3846	0.54	-0.1
4,369,813	+		PP_3846	0.54	-1.5
4,369,814	-		PP_3846	0.54	+1.5
4,369,916	-		PP_3846	0.67	+0.5
4,369,916	-		PP_3846	0.67	+2.8
4,369,916	-		PP_3846	0.67	-0.7
4,369,974	+		PP_3846	0.74	-0.2
4,369,974	+		PP_3846	0.74	-0.5
4,370,105	+				+0.5
4,370,123	+				-0.7
4,370,123	+				+0.1
4,370,123	+				+1.7
4,370,124	-				-0.9
4,370,136	-				+1.3
4,370,137	+				-0.5
4,370,138	-				+0.0
4,370,138	-				+0.8
4,370,138	-				+0.3
4,370,170	-				-0.0
4,370,205	+				-0.8
4,370,205	+				+0.5
4,370,205	+				+0.5
4,370,205	+				-1.8
4,370,206	-				+1.0
4,370,206	-				+1.1
4,370,206	-				+0.7
4,370,206	-				-0.7
4,370,206	-				-2.0