Strain Fitness in Pseudomonas putida KT2440 around PP_3842

Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
4,364,216	-				-0.0
4,364,216	-				-1.4
4,364,216	-				-0.0
4,364,216	-				+1.3
4,364,232	-				-0.1
4,364,232	-				-0.3
4,364,255	+				+0.3
4,364,255	+				+0.2
4,364,256	-				+0.6
4,364,485	+				+1.4
4,364,485	+				+0.4
4,364,485	+				-0.6
4,364,486	-				+1.6
4,364,486	-				-1.4
4,364,486	-				+0.0
4,364,499	+				-0.7
4,364,499	+				+0.1
4,364,499	+				+1.5
4,364,499	+				-1.0
4,364,500	-				+1.1
4,364,500	-				+0.7
4,364,611	+		PP_5635	0.47	-1.9
4,364,658	+		PP_5635	0.67	+0.3
4,364,658	+		PP_5635	0.67	+0.7
4,364,658	+		PP_5635	0.67	+0.8
4,364,659	-		PP_5635	0.67	+0.2
4,364,659	-		PP_5635	0.67	+0.6
4,364,662	+		PP_5635	0.68	-0.2
4,364,662	+		PP_5635	0.68	+0.6
4,364,662	+		PP_5635	0.68	-0.6
4,364,662	+		PP_5635	0.68	-1.2
4,364,662	+		PP_5635	0.68	-0.2
4,364,663	-		PP_5635	0.69	-0.2
4,364,663	-		PP_5635	0.69	+0.9
4,364,663	-		PP_5635	0.69	-1.3
4,364,663	-		PP_5635	0.69	-0.1
4,364,663	-		PP_5635	0.69	+0.9
4,364,663	-		PP_5635	0.69	-0.1
4,364,663	-		PP_5635	0.69	-1.0
4,364,706	+		PP_5635	0.87	-0.0
4,364,777	+				+1.4
4,364,777	+				+0.4
4,364,778	-				+1.9
4,364,795	-				+1.9
4,364,795	-				-0.4
4,364,916	+		PP_3841	0.40	+1.5
4,364,942	+		PP_3841	0.47	+5.6
4,364,942	+		PP_3841	0.47	-0.6
4,364,943	-		PP_3841	0.47	+1.2
4,364,943	-		PP_3841	0.47	+0.3
4,364,993	+		PP_3841	0.60	-0.2
4,364,994	-		PP_3841	0.61	+0.3
4,365,027	+		PP_3841	0.70	+0.3
4,365,037	-		PP_3841	0.72	-0.0
4,365,081	+		PP_3841	0.84	+1.7
4,365,081	+		PP_3841	0.84	+0.1
4,365,082	-		PP_3841	0.84	-0.1
4,365,095	-		PP_3841	0.88	-1.7
4,365,095	-		PP_3841	0.88	-0.5
4,365,095	-		PP_3841	0.88	+1.6
4,365,095	-		PP_3841	0.88	+0.0
4,365,143	-				-0.8
4,365,171	-				-0.3
4,365,171	-				+0.6
4,365,171	-				+0.5
4,365,349	-		PP_3842	0.12	+0.3
4,365,374	+		PP_3842	0.15	+2.7
4,365,374	+		PP_3842	0.15	+2.6
4,365,374	+		PP_3842	0.15	+0.9
4,365,374	+				+1.9
4,365,374	+		PP_3842	0.15	+0.7
4,365,374	+		PP_3842	0.15	-0.0
4,365,374	+		PP_3842	0.15	+0.3
4,365,375	-		PP_3842	0.15	+1.7
4,365,375	-		PP_3842	0.15	+0.2
4,365,375	-		PP_3842	0.15	+0.1
4,365,375	-		PP_3842	0.15	+0.8
4,365,375	-		PP_3842	0.15	-0.5
4,365,375	-		PP_3842	0.15	+1.2
4,365,375	-		PP_3842	0.15	+0.4
4,365,376	+				+1.1
4,365,376	+		PP_3842	0.15	-1.7
4,365,376	+				+1.5
4,365,376	+		PP_3842	0.15	-0.5
4,365,377	-		PP_3842	0.15	+0.5
4,365,377	-		PP_3842	0.15	+0.1
4,365,377	-		PP_3842	0.15	+1.7
4,365,377	-		PP_3842	0.15	+0.4
4,365,377	-		PP_3842	0.15	-2.3
4,365,398	-		PP_3842	0.17	-0.1
4,365,585	+		PP_3842	0.34	+1.9
4,365,637	+		PP_3842	0.39	+0.8
4,365,638	-		PP_3842	0.39	-0.7
4,365,638	-		PP_3842	0.39	+0.6
4,365,674	+		PP_3842	0.42	+2.3
4,365,685	-				+0.3
4,365,734	+		PP_3842	0.48	-0.5
4,365,736	+		PP_3842	0.48	+1.4
4,365,736	+		PP_3842	0.48	+1.1
4,365,736	+		PP_3842	0.48	+0.3
4,365,736	+		PP_3842	0.48	+0.4
4,365,737	-		PP_3842	0.48	-0.3
4,365,737	-		PP_3842	0.48	+0.1
4,365,737	-		PP_3842	0.48	+0.4
4,365,737	-		PP_3842	0.48	+0.3
4,365,737	-		PP_3842	0.48	+0.2
4,365,758	+		PP_3842	0.50	-1.3
4,365,759	-		PP_3842	0.50	-0.6
4,365,778	+		PP_3842	0.52	+1.6
4,365,778	+		PP_3842	0.52	+5.0
4,365,779	-		PP_3842	0.52	+0.1
4,365,779	-		PP_3842	0.52	+0.7
4,365,779	-		PP_3842	0.52	-1.0
4,365,808	+		PP_3842	0.54	-0.4
4,365,809	-		PP_3842	0.54	-0.6
4,365,917	+		PP_3842	0.64	+0.5
4,365,917	+		PP_3842	0.64	-1.1
4,365,918	-		PP_3842	0.64	-2.3
4,365,918	-		PP_3842	0.64	-0.8
4,365,984	+		PP_3842	0.70	-2.9
4,365,984	+		PP_3842	0.70	+0.5
4,365,985	-		PP_3842	0.70	-1.5
4,365,986	+		PP_3842	0.70	+0.5
4,365,986	+		PP_3842	0.70	+5.6
4,365,987	-		PP_3842	0.71	+0.2
4,366,038	+		PP_3842	0.75	-0.1
4,366,038	+		PP_3842	0.75	-0.5
4,366,039	-		PP_3842	0.75	+2.6
4,366,039	-		PP_3842	0.75	+0.4
4,366,063	+		PP_3842	0.78	-1.0
4,366,064	-		PP_3842	0.78	+0.5
4,366,064	-		PP_3842	0.78	+0.6
4,366,064	-		PP_3842	0.78	+1.5
4,366,065	+		PP_3842	0.78	-0.1
4,366,065	+		PP_3842	0.78	-0.6
4,366,065	+		PP_3842	0.78	-1.3
4,366,065	+		PP_3842	0.78	-1.5
4,366,065	+		PP_3842	0.78	+1.9
4,366,065	+		PP_3842	0.78	+0.1
4,366,066	-		PP_3842	0.78	+0.2
4,366,066	-		PP_3842	0.78	-1.0
4,366,066	-		PP_3842	0.78	-1.4
4,366,066	-		PP_3842	0.78	+1.8
4,366,066	-		PP_3842	0.78	-0.6
4,366,066	-		PP_3842	0.78	+0.3
4,366,066	-		PP_3842	0.78	-0.1
4,366,066	-		PP_3842	0.78	-0.4
4,366,071	+		PP_3842	0.78	+0.9
4,366,147	+		PP_3842	0.85	-0.2
4,366,199	+		PP_3842	0.90	-0.4
4,366,199	+		PP_3842	0.90	-0.2
4,366,199	+		PP_3842	0.90	+0.2
4,366,200	-				+1.0
4,366,200	-				-1.2
4,366,207	+				+0.4
4,366,207	+				-0.8
4,366,250	+				+1.4
4,366,398	+				-0.4
4,366,399	-				-0.3
4,366,399	-				+0.3
4,366,567	-		PP_3843	0.44	-0.9
4,366,586	+		PP_3843	0.50	-0.8
4,366,586	+		PP_3843	0.50	-2.0
4,366,586	+		PP_3843	0.50	+0.3
4,366,587	-		PP_3843	0.51	-0.1
4,366,587	-		PP_3843	0.51	+0.5
4,366,587	-		PP_3843	0.51	-1.7
4,366,587	-		PP_3843	0.51	+0.1
4,366,646	+		PP_3843	0.70	+1.6
4,366,646	+		PP_3843	0.70	+0.4
4,366,646	+		PP_3843	0.70	-0.1
4,366,646	+		PP_3843	0.70	-0.4
4,366,646	+		PP_3843	0.70	-0.5
4,366,646	+		PP_3843	0.70	-1.0
4,366,646	+		PP_3843	0.70	-1.4
4,366,646	+		PP_3843	0.70	+0.1
4,366,646	+		PP_3843	0.70	-0.0
4,366,647	-		PP_3843	0.71	+0.5
4,366,647	-		PP_3843	0.71	+0.3
4,366,647	-		PP_3843	0.71	-1.5
4,366,647	-		PP_3843	0.71	+0.6
4,366,647	-		PP_3843	0.71	+1.1
4,366,647	-		PP_3843	0.71	+0.4
4,366,647	-		PP_3843	0.71	-0.7
4,366,647	-		PP_3843	0.71	+0.6
4,366,647	-		PP_3843	0.71	+0.1
4,366,647	-		PP_3843	0.71	-0.2
4,366,726	+				-0.5
4,366,726	+				-0.8
4,366,745	+				+0.8
4,366,745	+				+0.2
4,366,754	-				+1.7
4,366,754	-				+0.4
4,366,754	-				+0.6
4,366,759	+				+0.5
4,366,773	-				+1.1
4,366,773	-				+0.6
4,366,783	+				+0.3
4,366,783	+				-0.2
4,366,915	+				+0.3
4,366,915	+				+3.8
4,366,986	+				+0.6
4,367,022	+				+0.4
4,367,025	+				-1.4
4,367,025	+				-1.6
4,367,025	+				+2.3
4,367,026	-				-0.4
4,367,026	-				-0.5
4,367,084	+		PP_3844	0.15	-0.1
4,367,105	+		PP_3844	0.17	+1.4
4,367,105	+		PP_3844	0.17	-1.2
4,367,105	+		PP_3844	0.17	-0.0
4,367,105	+		PP_3844	0.17	-1.5
4,367,105	+		PP_3844	0.17	-0.1
4,367,105	+		PP_3844	0.17	+0.2
4,367,106	-		PP_3844	0.17	-1.1
4,367,106	-		PP_3844	0.17	-1.1
4,367,106	-		PP_3844	0.17	+0.2
4,367,106	-		PP_3844	0.17	+0.1
4,367,106	-		PP_3844	0.17	+1.2
4,367,132	+		PP_3844	0.19	+0.3
4,367,141	-		PP_3844	0.20	+0.1
4,367,141	-		PP_3844	0.20	+1.0
4,367,258	+		PP_3844	0.30	-1.0
4,367,259	-				+0.3
4,367,304	+		PP_3844	0.34	+0.0
4,367,304	+		PP_3844	0.34	+0.8
4,367,304	+		PP_3844	0.34	-0.4
4,367,305	-		PP_3844	0.34	-0.7