Experiment: Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0088 and PP_0089 are separated by 152 nucleotides PP_0089 and PP_0090 are separated by 12 nucleotides PP_0090 and PP_0091 are separated by 35 nucleotides PP_0091 and PP_0092 are separated by 55 nucleotides PP_0092 and PP_0093 are separated by 85 nucleotides
PP_0088: PP_0088 - putative alkanal monooxygenase, at 95,680 to 96,684
_0088
PP_0089: PP_0089 - stress-induced peroxiredoxin, lipoyl-dependent peroxidase, at 96,837 to 97,262
_0089
PP_0090: PP_0090 - conserved exported protein of unknown function, at 97,275 to 97,571
_0090
PP_0091: PP_0091 - putative lipoprotein, at 97,607 to 98,020
_0091
PP_0092: PP_0092 - putative lipoprotein, at 98,076 to 98,489
_0092
PP_0093: PP_0093 - putative zinc protease protein, at 98,575 to 99,651
_0093
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 96.730 kb on - strand at 96.765 kb on + strand at 96.765 kb on + strand at 96.765 kb on + strand at 96.766 kb on - strand at 96.766 kb on - strand at 96.766 kb on - strand at 96.766 kb on - strand at 96.766 kb on - strand at 96.766 kb on - strand at 96.806 kb on + strand at 96.811 kb on - strand at 96.811 kb on - strand at 96.811 kb on - strand at 96.811 kb on - strand at 96.811 kb on - strand at 96.811 kb on - strand at 96.811 kb on - strand at 96.899 kb on + strand, within PP_0089 at 96.930 kb on + strand, within PP_0089 at 97.049 kb on + strand, within PP_0089 at 97.049 kb on + strand, within PP_0089 at 97.050 kb on - strand, within PP_0089 at 97.147 kb on + strand, within PP_0089 at 97.147 kb on + strand, within PP_0089 at 97.147 kb on + strand, within PP_0089 at 97.147 kb on + strand, within PP_0089 at 97.290 kb on - strand at 97.294 kb on + strand at 97.294 kb on + strand at 97.294 kb on + strand at 97.295 kb on - strand at 97.348 kb on + strand, within PP_0090 at 97.348 kb on + strand, within PP_0090 at 97.348 kb on + strand, within PP_0090 at 97.349 kb on - strand, within PP_0090 at 97.349 kb on - strand, within PP_0090 at 97.349 kb on - strand, within PP_0090 at 97.349 kb on - strand, within PP_0090 at 97.352 kb on + strand, within PP_0090 at 97.353 kb on - strand, within PP_0090 at 97.551 kb on + strand at 97.551 kb on + strand at 97.552 kb on - strand at 97.552 kb on - strand at 97.626 kb on + strand at 97.630 kb on + strand at 97.631 kb on - strand at 97.665 kb on + strand, within PP_0091 at 97.665 kb on + strand, within PP_0091 at 97.666 kb on - strand, within PP_0091 at 97.666 kb on - strand, within PP_0091 at 97.666 kb on - strand, within PP_0091 at 97.667 kb on + strand, within PP_0091 at 97.667 kb on + strand, within PP_0091 at 97.667 kb on + strand, within PP_0091 at 97.667 kb on + strand, within PP_0091 at 97.667 kb on + strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.668 kb on - strand, within PP_0091 at 97.797 kb on + strand, within PP_0091 at 97.807 kb on - strand, within PP_0091 at 97.923 kb on + strand, within PP_0091 at 97.923 kb on + strand, within PP_0091 at 97.924 kb on - strand, within PP_0091 at 97.924 kb on - strand, within PP_0091 at 97.987 kb on + strand at 97.987 kb on + strand at 97.987 kb on + strand at 97.987 kb on + strand at 97.988 kb on - strand at 97.988 kb on - strand at 97.988 kb on - strand at 98.049 kb on + strand at 98.049 kb on + strand at 98.058 kb on + strand at 98.058 kb on + strand at 98.059 kb on - strand at 98.142 kb on + strand at 98.261 kb on + strand, within PP_0092 at 98.287 kb on + strand, within PP_0092 at 98.381 kb on + strand, within PP_0092 at 98.381 kb on + strand, within PP_0092 at 98.381 kb on + strand, within PP_0092 at 98.382 kb on - strand, within PP_0092 at 98.479 kb on - strand at 98.479 kb on - strand at 98.513 kb on + strand at 98.514 kb on - strand at 98.514 kb on - strand at 98.574 kb on + strand at 98.671 kb on + strand at 98.672 kb on - strand at 98.672 kb on - strand at 98.674 kb on + strand at 98.674 kb on + strand at 98.674 kb on + strand at 98.674 kb on + strand at 98.675 kb on - strand at 98.675 kb on - strand at 98.675 kb on - strand at 98.726 kb on + strand, within PP_0093 at 98.726 kb on + strand, within PP_0093 at 98.727 kb on - strand, within PP_0093 at 98.752 kb on - strand, within PP_0093 at 98.851 kb on + strand, within PP_0093 at 98.851 kb on + strand, within PP_0093 at 98.852 kb on - strand, within PP_0093 at 98.873 kb on - strand, within PP_0093 at 98.873 kb on - strand, within PP_0093 at 98.956 kb on + strand, within PP_0093 at 98.966 kb on - strand, within PP_0093 at 98.969 kb on - strand, within PP_0093 at 98.969 kb on - strand, within PP_0093 at 98.969 kb on - strand, within PP_0093
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 96,730 - +0.7 96,765 + +1.1 96,765 + -1.8 96,765 + +0.2 96,766 - -0.5 96,766 - -0.1 96,766 - -0.4 96,766 - +0.0 96,766 - -0.3 96,766 - +1.2 96,806 + +2.9 96,811 - -0.2 96,811 - -1.0 96,811 - -1.3 96,811 - +0.4 96,811 - -0.0 96,811 - -0.7 96,811 - +1.5 96,899 + PP_0089 0.15 +4.0 96,930 + PP_0089 0.22 -0.7 97,049 + PP_0089 0.50 -0.8 97,049 + PP_0089 0.50 -1.9 97,050 - PP_0089 0.50 -1.1 97,147 + PP_0089 0.73 -2.1 97,147 + PP_0089 0.73 +0.6 97,147 + PP_0089 0.73 -0.1 97,147 + PP_0089 0.73 -1.2 97,290 - -0.5 97,294 + -0.2 97,294 + +0.6 97,294 + +1.2 97,295 - -0.7 97,348 + PP_0090 0.25 +2.8 97,348 + PP_0090 0.25 +1.7 97,348 + PP_0090 0.25 +0.3 97,349 - PP_0090 0.25 +0.2 97,349 - PP_0090 0.25 +0.6 97,349 - PP_0090 0.25 -2.7 97,349 - PP_0090 0.25 +2.6 97,352 + PP_0090 0.26 -2.4 97,353 - PP_0090 0.26 +0.2 97,551 + -1.2 97,551 + -1.4 97,552 - -1.4 97,552 - -0.3 97,626 + +0.4 97,630 + -0.6 97,631 - +0.1 97,665 + PP_0091 0.14 +0.3 97,665 + PP_0091 0.14 -0.5 97,666 - PP_0091 0.14 -0.4 97,666 - PP_0091 0.14 +0.1 97,666 - PP_0091 0.14 -1.2 97,667 + PP_0091 0.14 -0.0 97,667 + PP_0091 0.14 +0.6 97,667 + PP_0091 0.14 -1.2 97,667 + PP_0091 0.14 -1.6 97,667 + PP_0091 0.14 -0.5 97,668 - PP_0091 0.15 -1.8 97,668 - PP_0091 0.15 -1.0 97,668 - PP_0091 0.15 +2.0 97,668 - PP_0091 0.15 +1.7 97,668 - PP_0091 0.15 -0.2 97,668 - PP_0091 0.15 -0.1 97,668 - PP_0091 0.15 -0.4 97,668 - PP_0091 0.15 -0.6 97,797 + PP_0091 0.46 -1.3 97,807 - PP_0091 0.48 -0.2 97,923 + PP_0091 0.76 -1.4 97,923 + PP_0091 0.76 -0.1 97,924 - PP_0091 0.77 -1.0 97,924 - PP_0091 0.77 -2.4 97,987 + -0.7 97,987 + +1.1 97,987 + -1.0 97,987 + +0.3 97,988 - +0.7 97,988 - +0.2 97,988 - +1.5 98,049 + +0.6 98,049 + -0.4 98,058 + -0.7 98,058 + -3.0 98,059 - +0.2 98,142 + +0.4 98,261 + PP_0092 0.45 -0.6 98,287 + PP_0092 0.51 +0.3 98,381 + PP_0092 0.74 -0.5 98,381 + PP_0092 0.74 +0.1 98,381 + PP_0092 0.74 +0.4 98,382 - PP_0092 0.74 +0.8 98,479 - -0.1 98,479 - +0.1 98,513 + -1.9 98,514 - +1.4 98,514 - +0.5 98,574 + +1.2 98,671 + -0.1 98,672 - +0.5 98,672 - -0.8 98,674 + -2.8 98,674 + +1.3 98,674 + +0.0 98,674 + +0.8 98,675 - -2.4 98,675 - +0.1 98,675 - +0.6 98,726 + PP_0093 0.14 -1.6 98,726 + PP_0093 0.14 -0.5 98,727 - PP_0093 0.14 -0.6 98,752 - PP_0093 0.16 +0.4 98,851 + PP_0093 0.26 -1.3 98,851 + PP_0093 0.26 +0.4 98,852 - PP_0093 0.26 +0.9 98,873 - PP_0093 0.28 -3.2 98,873 - PP_0093 0.28 +1.7 98,956 + PP_0093 0.35 +0.4 98,966 - PP_0093 0.36 -1.9 98,969 - PP_0093 0.37 -0.4 98,969 - PP_0093 0.37 +1.1 98,969 - PP_0093 0.37 -0.7
Or see this region's nucleotide sequence