Experiment: Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0843 and PP_0844 are separated by 28 nucleotides PP_0844 and PP_0845 are separated by 8 nucleotides PP_0845 and PP_0846 are separated by 43 nucleotides PP_0846 and PP_0847 are separated by 3 nucleotides PP_0847 and PP_0848 are separated by 10 nucleotides PP_0848 and PP_0849 are separated by 88 nucleotides
PP_0843: PP_0843 - scaffold protein involved in iron-sulfur cluster assembly, at 979,812 to 980,198
_0843
PP_0844: PP_0844 - iron-sulfur cluster assembly protein, copper(I) binding, at 980,227 to 980,550
_0844
PP_0845: PP_0845 - DnaJ-like molecular chaperone specific for IscU, at 980,559 to 981,080
_0845
PP_0846: PP_0846 - DnaK-like molecular chaperone specific for IscU, at 981,124 to 982,986
_0846
PP_0847: PP_0847 - ferredoxin, at 982,990 to 983,331
_0847
PP_0848: PP_0848 - donor of Fe2+ and regulator of cysteine desulfurase activity, at 983,342 to 983,542
_0848
PP_0849: PP_0849 - Nucleoside diphosphate kinase, at 983,631 to 984,056
_0849
Position (kb) 981
982
983 Strain fitness (log2 ratio) -2
-1
0
1 at 980.196 kb on + strand at 980.215 kb on + strand at 980.215 kb on + strand at 980.215 kb on + strand at 980.564 kb on + strand at 981.106 kb on + strand at 981.106 kb on + strand at 981.106 kb on + strand at 981.111 kb on + strand at 981.111 kb on + strand at 981.111 kb on + strand at 982.727 kb on + strand, within PP_0846 at 982.727 kb on + strand, within PP_0846 at 982.727 kb on + strand, within PP_0846 at 983.339 kb on + strand at 983.339 kb on + strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.340 kb on - strand at 983.365 kb on - strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.417 kb on + strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.418 kb on - strand, within PP_0848 at 983.540 kb on + strand at 983.540 kb on + strand at 983.583 kb on + strand at 983.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 980,196 + -0.1 980,215 + -0.0 980,215 + -0.4 980,215 + -0.6 980,564 + -0.8 981,106 + -1.1 981,106 + -0.3 981,106 + -0.1 981,111 + -0.6 981,111 + -1.0 981,111 + +0.9 982,727 + PP_0846 0.86 -0.2 982,727 + PP_0846 0.86 +0.8 982,727 + PP_0846 0.86 -0.2 983,339 + +0.0 983,339 + -0.1 983,340 - +0.8 983,340 - -2.1 983,340 - +0.5 983,340 - -0.2 983,340 - -1.6 983,365 - PP_0848 0.11 +1.0 983,417 + PP_0848 0.37 -0.0 983,417 + PP_0848 0.37 +0.8 983,418 - PP_0848 0.38 -1.4 983,418 - PP_0848 0.38 -1.0 983,540 + +0.1 983,540 + +1.2 983,583 + +0.8 983,583 + +0.2
Or see this region's nucleotide sequence